Class information for:
Level 1: DNA LIGASE//NAD DEPENDENT DNA LIGASE//DNA LIGASE I

Basic class information
Class id #P Avg. number of
references		 Database coverage
of references
12876 875 36.5 76%


Bar chart of Publication_year

Last years might be incomplete

Hierarchy of classes
The table includes all classes above and classes immediately below the current class.


Cluster id Level Cluster label #P
0 4 BIOCHEMISTRY & MOLECULAR BIOLOGY//CELL BIOLOGY//ONCOLOGY 4064930
153 3       BIOCHEMISTRY & MOLECULAR BIOLOGY//RIBOSOME//RNA 62593
1084 2             AMINOACYL TRNA SYNTHETASE//TRNA//AMINOACYL TRANSFER RNA SYNTHETASE 9879
12876 1                   DNA LIGASE//NAD DEPENDENT DNA LIGASE//DNA LIGASE I 875

Terms with highest relevance score


rank Term termType Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 DNA LIGASE authKW 1212634 8% 50% 69
2 NAD DEPENDENT DNA LIGASE authKW 314065 1% 100% 9
3 DNA LIGASE I authKW 308034 2% 55% 16
4 PROGRAM MOL BIOL address 242296 13% 6% 115
5 RNA TRIPHOSPHATASE authKW 213737 1% 88% 7
6 LIGASE INHIBITOR authKW 139584 0% 100% 4
7 BACTERIAL DNA LIGASE authKW 104688 0% 100% 3
8 FUNCTIONAL ORGANIZATION OF THE NUCLEUS authKW 104688 0% 100% 3
9 LIG1 authKW 93054 0% 67% 4
10 MRNA CAP METHYLATION authKW 93054 0% 67% 4

Web of Science journal categories


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 Biochemistry & Molecular Biology 6705 71% 0% 617
2 Cell Biology 462 13% 0% 118
3 Biophysics 396 9% 0% 76
4 Genetics & Heredity 151 7% 0% 60
5 Biochemical Research Methods 147 5% 0% 46
6 Virology 118 3% 0% 29
7 Microbiology 106 6% 0% 53
8 Developmental Biology 45 2% 0% 16
9 Toxicology 41 3% 0% 25
10 Biotechnology & Applied Microbiology 26 4% 0% 34

Address terms


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 PROGRAM MOL BIOL 242296 13% 6% 115
2 SIGNAL TRANSDUCT THER IES 69792 0% 100% 2
3 DNA ENZYMES 46527 0% 67% 2
4 RADIOCYTOGENET 46527 0% 67% 2
5 ANDRSON 34896 0% 100% 1
6 ANTIMICROBIAL THER 34896 0% 100% 1
7 BIOL GENET DEV CNRS URA 256 34896 0% 100% 1
8 BIOL SCI 348 MANTER HALL 34896 0% 100% 1
9 BIOTECHNOL BIOMEDBBZ 34896 0% 100% 1
10 CHEM SCI PHAM 34896 0% 100% 1

Journals


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 NUCLEIC ACIDS RESEARCH 12468 14% 0% 119
2 JOURNAL OF BIOLOGICAL CHEMISTRY 3674 15% 0% 128
3 RNA-A PUBLICATION OF THE RNA SOCIETY 1331 1% 1% 7
4 PROGRESS IN NUCLEIC ACID RESEARCH AND MOLECULAR BIOLOGY 1042 0% 1% 4
5 ARCHAEA-AN INTERNATIONAL MICROBIOLOGICAL JOURNAL 939 0% 1% 2
6 MUTATION RESEARCH-GENOMICS 893 0% 3% 1
7 DNA REPAIR 828 1% 0% 7
8 MOLECULAR AND CELLULAR BIOLOGY 658 2% 0% 21
9 MUTATION RESEARCH-DNA REPAIR 639 0% 1% 3
10 MOLECULAR CELL 622 1% 0% 10

Author Key Words


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class		 LCSH search Wikipedia search
1 DNA LIGASE 1212634 8% 50% 69 Search DNA+LIGASE Search DNA+LIGASE
2 NAD DEPENDENT DNA LIGASE 314065 1% 100% 9 Search NAD+DEPENDENT+DNA+LIGASE Search NAD+DEPENDENT+DNA+LIGASE
3 DNA LIGASE I 308034 2% 55% 16 Search DNA+LIGASE+I Search DNA+LIGASE+I
4 RNA TRIPHOSPHATASE 213737 1% 88% 7 Search RNA+TRIPHOSPHATASE Search RNA+TRIPHOSPHATASE
5 LIGASE INHIBITOR 139584 0% 100% 4 Search LIGASE+INHIBITOR Search LIGASE+INHIBITOR
6 BACTERIAL DNA LIGASE 104688 0% 100% 3 Search BACTERIAL+DNA+LIGASE Search BACTERIAL+DNA+LIGASE
7 FUNCTIONAL ORGANIZATION OF THE NUCLEUS 104688 0% 100% 3 Search FUNCTIONAL+ORGANIZATION+OF+THE+NUCLEUS Search FUNCTIONAL+ORGANIZATION+OF+THE+NUCLEUS
8 LIG1 93054 0% 67% 4 Search LIG1 Search LIG1
9 MRNA CAP METHYLATION 93054 0% 67% 4 Search MRNA+CAP+METHYLATION Search MRNA+CAP+METHYLATION
10 MRNA CAPPING 77000 1% 28% 8 Search MRNA+CAPPING Search MRNA+CAPPING

Core articles
The table includes core articles in the class. The following variables is taken into account for the relevance score of an article in a cluster c:
(1) Number of references referring to publications in the class.
(2) Share of total number of active references referring to publications in the class.
(3) Age of the article. New articles get higher score than old articles.
(4) Citation rate, normalized to year.


Rank Reference # ref.
in cl.		 Shr. of ref. in
cl.		 Citations
1 PERGOLIZZI, G , WAGNER, GK , BOWATER, RP , (2016) BIOCHEMICAL AND STRUCTURAL CHARACTERIZATION OF DNA LIGASES FROM BACTERIA AND ARCHAEA.BIOSCIENCE REPORTS. VOL. 36. ISSUE . P. - 83 86% 0
2 KYRIELEIS, OJP , CHANG, J , DE LA PENA, M , SHUMAN, S , CUSACK, S , (2014) CRYSTAL STRUCTURE OF VACCINIA VIRUS MRNA CAPPING ENZYME PROVIDES INSIGHTS INTO THE MECHANISM AND EVOLUTION OF THE CAPPING APPARATUS.STRUCTURE. VOL. 22. ISSUE 3. P. 452-465 44 88% 9
3 CHAULEAU, M , SHUMAN, S , (2016) KINETIC MECHANISM AND FIDELITY OF NICK SEALING BY ESCHERICHIA COLI NAD(+)-DEPENDENT DNA LIGASE (LIGA).NUCLEIC ACIDS RESEARCH. VOL. 44. ISSUE 5. P. 2298 -2309 39 87% 1
4 SHUMAN, S , (2001) STRUCTURE, MECHANISM, AND EVOLUTION OF THE MRNA CAPPING APPARATUS.PROGRESS IN NUCLEIC ACID RESEARCH AND MOLECULAR BIOLOGY, VOL 66. VOL. 66. ISSUE . P. 1 -40 60 73% 133
5 SAWAYA, R , SHUMAN, S , (2003) MUTATIONAL ANALYSIS OF THE GUANYLYLTRANSFERASE COMPONENT OF MAMMALIAN MRNA CAPPING ENZYME.BIOCHEMISTRY. VOL. 42. ISSUE 27. P. 8240-8249 43 96% 24
6 CHAMBERS, CR , PATRICK, WM , (2015) ARCHAEAL NUCLEIC ACID LIGASES AND THEIR POTENTIAL IN BIOTECHNOLOGY.ARCHAEA-AN INTERNATIONAL MICROBIOLOGICAL JOURNAL. VOL. . ISSUE . P. - 47 65% 1
7 WILLIAMSON, A , HJERDE, E , KAHLKE, T , (2016) ANALYSIS OF THE DISTRIBUTION AND EVOLUTION OF THE ATP-DEPENDENT DNA LIGASES OF BACTERIA DELINEATES A DISTINCT PHYLOGENETIC GROUP 'LIG E'.MOLECULAR MICROBIOLOGY. VOL. 99. ISSUE 2. P. 274 -290 42 66% 1
8 AKEY, D , MARTINS, A , ANIUKWU, J , GLICKMAN, MS , SHUMAN, S , BERGER, JM , (2006) CRYSTAL STRUCTURE AND NONHOMOLOGOUS END-JOINING FUNCTION OF THE LIGASE COMPONENT OF MYCOBACTERIUM DNA LIGASE D.JOURNAL OF BIOLOGICAL CHEMISTRY. VOL. 281. ISSUE 19. P. 13412-13423 44 76% 42
9 PASCAL, JM , (2008) DNA AND RNA LIGASES: STRUCTURAL VARIATIONS AND SHARED MECHANISMS.CURRENT OPINION IN STRUCTURAL BIOLOGY. VOL. 18. ISSUE 1. P. 96-105 32 94% 49
10 BAUER, RJ , EVANS, TC , LOHMAN, GJS , (2016) THE INHIBITORY EFFECT OF NON-SUBSTRATE AND SUBSTRATE DNA ON THE LIGATION AND SELF-ADENYLYLATION REACTIONS CATALYZED BY T4 DNA LIGASE.PLOS ONE. VOL. 11. ISSUE 3. P. - 34 81% 0

Classes with closest relation at Level 1


Rank Class id link
1 19766 TRNA SPLICING//POLYNUCLEOTIDE KINASE//SPLICING ENDONUCLEASE
2 3254 DNA PK//NON HOMOLOGOUS END JOINING//DNA DEPENDENT PROTEIN KINASE
3 21108 FEN1//BRAUN S//CREAT INITIAT CELL CYCLE CONTROL
4 31033 ENZYME CLEAVABLE LINKERS//POLYETHYLENE GLYCOL SUPPORTED SUBSTRATES//SOLID PHASE BIOCATALYSIS
5 5889 P TEFB//CDK9//RNA POLYMERASE II
6 33383 SPEL 6//AND PLASMIDS//ASSEMBLY OF DNA FRAGMENTS
7 4248 DNA POLYMERASE DELTA//DNA POLYMERASE ALPHA//DNA SYNTHESOME
8 5439 DNA POLYMERASE BETA//DNA POLYMERASE//DNA POLYMERASE LAMBDA
9 4182 HYBRIDIZATION CHAIN REACTION//ROLLING CIRCLE AMPLIFICATION//DNAZYME
10 33225 EXO POLYMERASE//RSM ASSAY//3 NUCLEOTIDE DIFFERENCES

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