Class information for:
Level 1: TRNA SPLICING//POLYNUCLEOTIDE KINASE//SPLICING ENDONUCLEASE

Basic class information
Class id #P Avg. number of
references		 Database coverage
of references
19766 490 36.4 80%


Bar chart of Publication_year

Last years might be incomplete

Hierarchy of classes
The table includes all classes above and classes immediately below the current class.


Cluster id Level Cluster label #P
0 4 BIOCHEMISTRY & MOLECULAR BIOLOGY//CELL BIOLOGY//ONCOLOGY 4064930
153 3       BIOCHEMISTRY & MOLECULAR BIOLOGY//RIBOSOME//RNA 62593
1084 2             AMINOACYL TRNA SYNTHETASE//TRNA//AMINOACYL TRANSFER RNA SYNTHETASE 9879
19766 1                   TRNA SPLICING//POLYNUCLEOTIDE KINASE//SPLICING ENDONUCLEASE 490

Terms with highest relevance score


rank Term termType Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 TRNA SPLICING authKW 972921 4% 71% 22
2 POLYNUCLEOTIDE KINASE authKW 947622 4% 72% 21
3 SPLICING ENDONUCLEASE authKW 498528 2% 100% 8
4 T4 POLYNUCLEOTIDE KINASE authKW 396845 2% 58% 11
5 DNA PHOSPHORYLATION authKW 320481 1% 86% 6
6 BULGE HELIX BULGE MOTIF authKW 311580 1% 100% 5
7 POLYNUCLEOTIDE KINASE PHOSPHATASE authKW 311580 1% 100% 5
8 RNA END HEALING authKW 311580 1% 100% 5
9 RNA REPAIR authKW 311560 3% 33% 15
10 RNA LIGASE authKW 284616 3% 35% 13

Web of Science journal categories


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 Biochemistry & Molecular Biology 4534 77% 0% 377
2 Cell Biology 496 18% 0% 87
3 Biophysics 293 10% 0% 48
4 Chemistry, Analytical 162 9% 0% 45
5 Biochemical Research Methods 101 6% 0% 28
6 Genetics & Heredity 74 7% 0% 32
7 Electrochemistry 27 3% 0% 13
8 Microbiology 18 4% 0% 20
9 Biotechnology & Applied Microbiology 17 4% 0% 20
10 Evolutionary Biology 12 1% 0% 7

Address terms


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 PROGRAM MOL BIOL 91881 11% 3% 53
2 IST BIOL CELLULARE 78525 2% 11% 11
3 BIOL TECHNOLBIOMED ENGN 62316 0% 100% 1
4 BIOMED ENGN CHEM CHEM ENG 62316 0% 100% 1
5 BIONANTECHNOL MOL ENGN HUNAN PROV 62316 0% 100% 1
6 BIOSENSING CHEMOMETR 62316 0% 100% 1
7 GENETMANTON ORPHAN DI ILDRENS HOSP 62316 0% 100% 1
8 KUROIWA INITIAT UNIT 62316 0% 100% 1
9 MAX PLANCK GRP PROKARYOT SMALL RNA BIOL 62316 0% 100% 1
10 NANOBIO INTER CE 62316 0% 100% 1

Journals


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 RNA 11873 4% 1% 22
2 RNA-A PUBLICATION OF THE RNA SOCIETY 5911 2% 1% 11
3 NUCLEIC ACIDS RESEARCH 5092 12% 0% 57
4 JOURNAL OF BIOLOGICAL CHEMISTRY 1142 11% 0% 54
5 EMBO JOURNAL 1030 3% 0% 17
6 CELL 916 3% 0% 15
7 FRONTIERS IN GENETICS 696 1% 0% 3
8 TRENDS IN BIOCHEMICAL SCIENCES 597 1% 0% 6
9 MOLECULAR AND CELLULAR BIOLOGY 527 3% 0% 14
10 BIOSENSORS & BIOELECTRONICS 512 2% 0% 9

Author Key Words


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class		 LCSH search Wikipedia search
1 TRNA SPLICING 972921 4% 71% 22 Search TRNA+SPLICING Search TRNA+SPLICING
2 POLYNUCLEOTIDE KINASE 947622 4% 72% 21 Search POLYNUCLEOTIDE+KINASE Search POLYNUCLEOTIDE+KINASE
3 SPLICING ENDONUCLEASE 498528 2% 100% 8 Search SPLICING+ENDONUCLEASE Search SPLICING+ENDONUCLEASE
4 T4 POLYNUCLEOTIDE KINASE 396845 2% 58% 11 Search T4+POLYNUCLEOTIDE+KINASE Search T4+POLYNUCLEOTIDE+KINASE
5 DNA PHOSPHORYLATION 320481 1% 86% 6 Search DNA+PHOSPHORYLATION Search DNA+PHOSPHORYLATION
6 BULGE HELIX BULGE MOTIF 311580 1% 100% 5 Search BULGE+HELIX+BULGE+MOTIF Search BULGE+HELIX+BULGE+MOTIF
7 POLYNUCLEOTIDE KINASE PHOSPHATASE 311580 1% 100% 5 Search POLYNUCLEOTIDE+KINASE+PHOSPHATASE Search POLYNUCLEOTIDE+KINASE+PHOSPHATASE
8 RNA END HEALING 311580 1% 100% 5 Search RNA+END+HEALING Search RNA+END+HEALING
9 RNA REPAIR 311560 3% 33% 15 Search RNA+REPAIR Search RNA+REPAIR
10 RNA LIGASE 284616 3% 35% 13 Search RNA+LIGASE Search RNA+LIGASE

Core articles
The table includes core articles in the class. The following variables is taken into account for the relevance score of an article in a cluster c:
(1) Number of references referring to publications in the class.
(2) Share of total number of active references referring to publications in the class.
(3) Age of the article. New articles get higher score than old articles.
(4) Citation rate, normalized to year.


Rank Reference # ref.
in cl.		 Shr. of ref. in
cl.		 Citations
1 POPOW, J , SCHLEIFFER, A , MARTINEZ, J , (2012) DIVERSITY AND ROLES OF (T)RNA LIGASES.CELLULAR AND MOLECULAR LIFE SCIENCES. VOL. 69. ISSUE 16. P. 2657 -2670 75 56% 28
2 LOPES, RRS , KESSLER, AC , POLYCARPO, C , ALFONZO, JD , (2015) CUTTING, DICING, HEALING AND SEALING: THE MOLECULAR SURGERY OF TRNA.WILEY INTERDISCIPLINARY REVIEWS-RNA. VOL. 6. ISSUE 3. P. 337 -349 50 72% 3
3 CALVIN, K , LI, H , (2008) RNA-SPLICING ENDONUCLEASE STRUCTURE AND FUNCTION.CELLULAR AND MOLECULAR LIFE SCIENCES. VOL. 65. ISSUE 7-8. P. 1176-1185 42 88% 42
4 YOSHIHISA, T , (2014) HANDLING TRNA INTRONS, ARCHAEAL WAY AND EUKARYOTIC WAY.FRONTIERS IN GENETICS. VOL. 5. ISSUE . P. - 66 47% 12
5 MA, CB , JIN, SX , WANG, J , WANG, KM , LIU, HS , WU, KF , (2016) A FLUORESCENCE-BASED ASSAY FOR T4 POLYNUCLEOTIDE KINASE/PHOSPHATASE ACTIVITY BASED ON A TERMINAL TRANSFERASE-AIDED PHOTOINDUCED ELECTRON TRANSFER STRATEGY.ANALYTICAL METHODS. VOL. 8. ISSUE 9. P. 1989 -1994 34 74% 0
6 ZOFALLOVA, L , GUO, YH , GUPTA, R , (2000) JUNCTION PHOSPHATE IS DERIVED FROM THE PRECURSOR IN THE TRNA SPLICED BY THE ARCHAEON HALOFERAX VOLCANII CELL EXTRACT.RNA-A PUBLICATION OF THE RNA SOCIETY. VOL. 6. ISSUE 7. P. 1019-1030 48 75% 27
7 DAS, U , WANG, LK , SMITH, P , MUNIR, A , SHUMAN, S , (2014) STRUCTURES OF BACTERIAL POLYNUCLEOTIDE KINASE IN A MICHAELIS COMPLEX WITH NUCLEOSIDE TRIPHOSPHATE (NTP)-MG2+ AND 5 '-OH RNA AND A MIXED SUBSTRATE-PRODUCT COMPLEX WITH NTP-MG2+ AND A 5 '-PHOSPHORYLATED OLIGONUCLEOTIDE.JOURNAL OF BACTERIOLOGY. VOL. 196. ISSUE 24. P. 4285 -4292 28 88% 2
8 MUNIR, A , SHUMAN, S , (2017) CHARACTERIZATION OF RUNELLA SLITHYFORMIS HD-PNK, A BIFUNCTIONAL DNA/RNA END-HEALING ENZYME COMPOSED OF AN N-TERMINAL 2 ', 3 '-PHOSPHOESTERASE HD DOMAIN AND A C-TERMINAL 5 '-OH POLYNUCLEOTIDE KINASE DOMAIN.JOURNAL OF BACTERIOLOGY. VOL. 199. ISSUE 3. P. - 33 66% 0
9 REMUS, BS , SHUMAN, S , (2014) DISTINCTIVE KINETICS AND SUBSTRATE SPECIFICITIES OF PLANT AND FUNGAL TRNA LIGASES.RNA. VOL. 20. ISSUE 4. P. 462-473 27 82% 3
10 DAS, U , SHUMAN, S , (2013) MECHANISM OF RNA 2',3'-CYCLIC PHOSPHATE END HEALING BY T4 POLYNUCLEOTIDE KINASE-PHOSPHATASE.NUCLEIC ACIDS RESEARCH. VOL. 41. ISSUE 1. P. 355-365 25 89% 6

Classes with closest relation at Level 1


Rank Class id link
1 19084 TRNASE Z//TRNA NUCLEOTIDYLTRANSFERASE//CCA ADDING ENZYME
2 25075 2 3 CYCLIC NUCLEOTIDE 3 PHOSPHODIESTERASE//CNPASE//P68 70
3 12876 DNA LIGASE//NAD DEPENDENT DNA LIGASE//DNA LIGASE I
4 5781 RNA POLYMERASE III//TFIIIB//RNA POLYMERASE III TRANSCRIPTION
5 22273 ARSACS//AOA2//SENATAXIN
6 25502 CIRCULAR RNA//CIRCRNA//BACK SPLICING
7 3592 TRNA MODIFICATION//QUEUINE//RNA MODIFICATION
8 8539 5S RRNA//5S RIBOSOMAL RNA//EXPANSION SEGMENT
9 23719 UDP SUGAR HYDROLASE//SUGAR PHOSPHATASES//HAD SUPERFAMILY
10 11880 APE1//AP ENDONUCLEASE//APE1 REF 1

Go to start page