Class information for:
Level 1: BIOL MACROMOL STRUCT//SHEARED G CENTER DOT A PAIR//SHEARED A CENTER DOT C PAIR

Basic class information
Class id #P Avg. number of
references		 Database coverage
of references
13926 804 39.7 75%


Bar chart of Publication_year

Last years might be incomplete

Hierarchy of classes
The table includes all classes above and classes immediately below the current class.


Cluster id Level Cluster label #P
5 4 CHEMISTRY, ORGANIC//CHEMISTRY, INORGANIC & NUCLEAR//CHEMISTRY, MULTIDISCIPLINARY 1745167
183 3       APTAMER//G QUADRUPLEX//RIBOZYME 56307
389 2             NUCLEOSIDES NUCLEOTIDES & NUCLEIC ACIDS//OLIGONUCLEOTIDES//PEPTIDE NUCLEIC ACID 16949
13926 1                   BIOL MACROMOL STRUCT//SHEARED G CENTER DOT A PAIR//SHEARED A CENTER DOT C PAIR 804

Terms with highest relevance score


rank Term termType Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 BIOL MACROMOL STRUCT address 218740 1% 48% 12
2 SHEARED G CENTER DOT A PAIR authKW 189889 1% 100% 5
3 SHEARED A CENTER DOT C PAIR authKW 113934 0% 100% 3
4 SHEARED GA PAIRING authKW 113934 0% 100% 3
5 G CENTER DOT A MISMATCH authKW 85449 0% 75% 3
6 2 5 LINKED RNA authKW 75956 0% 100% 2
7 A FORM CONFORMATION authKW 75956 0% 100% 2
8 BASE INTERCALATED DUPLEX authKW 75956 0% 100% 2
9 NUCLEIC ACID ENERGETICS authKW 75956 0% 100% 2
10 SINGLE RESIDUE LOOP authKW 75956 0% 100% 2

Web of Science journal categories


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 Biochemistry & Molecular Biology 6815 74% 0% 594
2 Biophysics 2342 20% 0% 162
3 Chemistry, Multidisciplinary 149 12% 0% 94
4 Biochemical Research Methods 118 5% 0% 40
5 Crystallography 53 3% 0% 23
6 Chemistry, Physical 31 8% 0% 61
7 Spectroscopy 26 2% 0% 18
8 Physics, Atomic, Molecular & Chemical 20 3% 0% 27
9 Chemistry, Organic 5 3% 0% 24
10 Cell Biology 2 3% 0% 25

Address terms


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 BIOL MACROMOL STRUCT 218740 1% 48% 12
2 ARBEITSGRP MAKROMOL STRUKTURANAL 48825 0% 43% 3
3 ARTHUR AMOS NOYES CHEM 37978 0% 100% 1
4 BIOCHEM MONTREAL JOINT STRUCT BIOL 37978 0% 100% 1
5 BIOL STRUCT PHARMACOL MOL 37978 0% 100% 1
6 BIRCK NANOTCCHNOL 37978 0% 100% 1
7 BSC CRG IRB JOINT PROGRAM COMPUTAT BIOL 37978 0% 100% 1
8 CBSE 235 37978 0% 100% 1
9 CSSB CHIM STRUCT BIOMOL 37978 0% 100% 1
10 DESYARBEITSGRP MAKROMOL STRUKTURANAL 37978 0% 100% 1

Journals


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS 15669 4% 1% 36
2 NUCLEIC ACIDS RESEARCH 12462 14% 0% 114
3 BIOCHEMISTRY 11653 16% 0% 128
4 BIOPOLYMERS 7541 4% 1% 36
5 JOURNAL OF MOLECULAR BIOLOGY 4876 7% 0% 55
6 NUCLEOSIDES NUCLEOTIDES & NUCLEIC ACIDS 3562 3% 0% 21
7 ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY 2469 2% 0% 17
8 NUCLEOSIDES & NUCLEOTIDES 1418 1% 1% 5
9 JOURNAL OF BIOMOLECULAR NMR 1140 1% 0% 9
10 RNA 944 1% 0% 8

Author Key Words


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class		 LCSH search Wikipedia search
1 SHEARED G CENTER DOT A PAIR 189889 1% 100% 5 Search SHEARED+G+CENTER+DOT+A+PAIR Search SHEARED+G+CENTER+DOT+A+PAIR
2 SHEARED A CENTER DOT C PAIR 113934 0% 100% 3 Search SHEARED+A+CENTER+DOT+C+PAIR Search SHEARED+A+CENTER+DOT+C+PAIR
3 SHEARED GA PAIRING 113934 0% 100% 3 Search SHEARED+GA+PAIRING Search SHEARED+GA+PAIRING
4 G CENTER DOT A MISMATCH 85449 0% 75% 3 Search G+CENTER+DOT+A+MISMATCH Search G+CENTER+DOT+A+MISMATCH
5 2 5 LINKED RNA 75956 0% 100% 2 Search 2+5+LINKED+RNA Search 2+5+LINKED+RNA
6 A FORM CONFORMATION 75956 0% 100% 2 Search A+FORM+CONFORMATION Search A+FORM+CONFORMATION
7 BASE INTERCALATED DUPLEX 75956 0% 100% 2 Search BASE+INTERCALATED+DUPLEX Search BASE+INTERCALATED+DUPLEX
8 NUCLEIC ACID ENERGETICS 75956 0% 100% 2 Search NUCLEIC+ACID+ENERGETICS Search NUCLEIC+ACID+ENERGETICS
9 SINGLE RESIDUE LOOP 75956 0% 100% 2 Search SINGLE+RESIDUE+LOOP Search SINGLE+RESIDUE+LOOP
10 UNPAIRED G STACKS 75956 0% 100% 2 Search UNPAIRED+G+STACKS Search UNPAIRED+G+STACKS

Core articles
The table includes core articles in the class. The following variables is taken into account for the relevance score of an article in a cluster c:
(1) Number of references referring to publications in the class.
(2) Share of total number of active references referring to publications in the class.
(3) Age of the article. New articles get higher score than old articles.
(4) Citation rate, normalized to year.


Rank Reference # ref.
in cl.		 Shr. of ref. in
cl.		 Citations
1 NAYAK, RK , VAN ORDEN, A , (2013) COUNTERION AND POLYTHYMIDINE LOOP-LENGTH-DEPENDENT FOLDING AND THERMODYNAMIC STABILITY OF DNA HAIRPINS REVEAL THE UNUSUAL COUNTERION-DEPENDENT STABILITY OF TETRALOOP HAIRPINS.JOURNAL OF PHYSICAL CHEMISTRY B. VOL. 117. ISSUE 45. P. 13956-13966 47 62% 2
2 CHAKRABORTY, D , COLLEPARDO-GUEVARA, R , WALES, DJ , (2014) ENERGY LANDSCAPES, FOLDING MECHANISMS, AND KINETICS OF RNA TETRA LOOP HAIRPINS.JOURNAL OF THE AMERICAN CHEMICAL SOCIETY. VOL. 136. ISSUE 52. P. 18052 -18061 37 39% 10
3 LAM, SL , CHI, LM , (2010) USE OF CHEMICAL SHIFTS FOR STRUCTURAL STUDIES OF NUCLEIC ACIDS.PROGRESS IN NUCLEAR MAGNETIC RESONANCE SPECTROSCOPY. VOL. 56. ISSUE 3. P. 289-310 47 34% 21
4 CHOU, SH , CHIN, KH , WANG, AHJ , (2003) UNUSUAL DNA DUPLEX AND HAIRPIN MOTIFS.NUCLEIC ACIDS RESEARCH. VOL. 31. ISSUE 10. P. 2461-2474 47 40% 59
5 MINER, JC , CHEN, AA , GARCIA, AE , (2016) FREE-ENERGY LANDSCAPE OF A HYPERSTABLE RNA TETRALOOP.PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. VOL. 113. ISSUE 24. P. 6665 -6670 27 47% 2
6 CHANG, CY , STELLWAGEN, NC , (2011) TANDEM GA RESIDUES ON OPPOSITE SIDES OF THE LOOP IN MOLECULAR BEACON-LIKE DNA HAIRPINS COMPACT THE LOOP AND INCREASE HAIRPIN STABILITY.BIOCHEMISTRY. VOL. 50. ISSUE 42. P. 9148-9157 31 48% 3
7 VANDONGEN, MJP , MOOREN, MMW , WILLEMS, EFA , VANDERMAREL, GA , VANBOOM, JH , WIJMENGA, SS , HILBERS, CW , (1997) STRUCTURAL FEATURES OF THE DNA HAIRPIN D(ATCCTA-GTTA-TAGGAT): FORMATION OF A G-A BASE PAIR IN THE LOOP.NUCLEIC ACIDS RESEARCH. VOL. 25. ISSUE 8. P. 1537-1547 27 71% 43
8 KUHROVA, P , BANAS, P , BEST, RB , SPONER, J , OTYEPKA, M , (2013) COMPUTER FOLDING OF RNA TETRALOOPS? ARE WE THERE YET?.JOURNAL OF CHEMICAL THEORY AND COMPUTATION. VOL. 9. ISSUE 4. P. 2115-2125 32 35% 22
9 MELNYKOV, AV , NAYAK, RK , HALL, KB , VAN ORDEN, A , (2015) EFFECT OF LOOP COMPOSITION ON THE STABILITY AND FOLDING KINETICS OF RNA HAIRPINS WITH LARGE LOOPS.BIOCHEMISTRY. VOL. 54. ISSUE 10. P. 1886 -1896 21 57% 1
10 CHEN, AA , GARCIA, AE , (2013) HIGH-RESOLUTION REVERSIBLE FOLDING OF HYPERSTABLE RNA TETRALOOPS USING MOLECULAR DYNAMICS SIMULATIONS.PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. VOL. 110. ISSUE 42. P. 16820-16825 18 47% 72

Classes with closest relation at Level 1


Rank Class id link
1 7907 DISTANCE GEOMETRY//JOURNAL OF MAGNETIC RESONANCE SERIES B//DGGTATACC2
2 2425 DNA CURVATURE//A TRACT//JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS
3 18145 RIBOSE AND NUCLEOBASE//ALTERNATE SITE SPECIFIC LABELING//DEUTERATED NUCLEOSIDES
4 28042 CROSS LINKED DNA DUPLEXES//OLIGONUCLEOTIDE 3 PHOSPHOROTHIOATES//OLIGONUCLEOTIDE MODIFICATION
5 25121 KSGA//DIM1//DIMETHYLTRANSFERASE
6 2673 RNA SECONDARY STRUCTURE//RNA SECONDARY STRUCTURE PREDICTION//PSEUDOKNOT
7 23453 ABASIC SITE//REGULATORY BIOORGAN CHEM//CHIM BIOORGANLEDSS
8 36765 PROGRAM BIOCHEM CHEM//2 SELENOURIDINE TRIPHOSPHATE//3 5 O DIACETYL 5 AMINOMETHYL 2 DEOXYURIDINE
9 5998 Z DNA//B Z TRANSITION//Z DNA BINDING PROTEIN
10 16834 SECT GENE STRUCT DIS//REPEAT INSTABILITY//MUTS BETA

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