Class information for:
Level 1: RNA SECONDARY STRUCTURE//RNA SECONDARY STRUCTURE PREDICTION//PSEUDOKNOT

Basic class information
Class id #P Avg. number of
references		 Database coverage
of references
2673 2177 41.3 78%


Bar chart of Publication_year

Last years might be incomplete

Hierarchy of classes
The table includes all classes above and classes immediately below the current class.


Cluster id Level Cluster label #P
5 4 CHEMISTRY, ORGANIC//CHEMISTRY, INORGANIC & NUCLEAR//CHEMISTRY, MULTIDISCIPLINARY 1745167
183 3       APTAMER//G QUADRUPLEX//RIBOZYME 56307
1185 2             RIBOZYME//RNASE P//CATALYTIC RNA 9289
2673 1                   RNA SECONDARY STRUCTURE//RNA SECONDARY STRUCTURE PREDICTION//PSEUDOKNOT 2177

Terms with highest relevance score


rank Term termType Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 RNA SECONDARY STRUCTURE authKW 686510 7% 31% 156
2 RNA SECONDARY STRUCTURE PREDICTION authKW 395413 2% 83% 34
3 PSEUDOKNOT authKW 348173 3% 35% 71
4 RNA STRUCTURE PREDICTION authKW 226251 1% 73% 22
5 NONCODING RNA TECHNOL HLTH address 134169 2% 27% 35
6 RNA MOTIF authKW 123672 1% 42% 21
7 INTERDISCIPLINARY BIOINFORMAT address 95972 2% 14% 50
8 RNA FOLDING authKW 95906 2% 13% 51
9 RNA STRUCTURE authKW 93559 3% 9% 72
10 NON WATSON CRICK BASE PAIR authKW 74792 0% 67% 8

Web of Science journal categories


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 Mathematical & Computational Biology 41475 25% 1% 553
2 Biochemical Research Methods 10755 24% 0% 519
3 Biochemistry & Molecular Biology 5752 44% 0% 951
4 Biotechnology & Applied Microbiology 4542 20% 0% 441
5 Computer Science, Interdisciplinary Applications 2146 9% 0% 196
6 Statistics & Probability 682 5% 0% 105
7 Biology 579 5% 0% 115
8 Computer Science, Theory & Methods 456 5% 0% 101
9 Biophysics 247 5% 0% 108
10 Mathematics, Interdisciplinary Applications 95 2% 0% 43

Address terms


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 NONCODING RNA TECHNOL HLTH 134169 2% 27% 35
2 INTERDISCIPLINARY BIOINFORMAT 95972 2% 14% 50
3 GRP BIOINFORMAT COMPUTAT BIOL 66814 0% 53% 9
4 BIOINFORMAT GRP 66210 4% 6% 79
5 GRP BCB 44877 0% 80% 4
6 IBHV 42928 1% 22% 14
7 AMIB TEAM PROJECT 42074 0% 100% 3
8 CCNSB 36056 0% 43% 6
9 IMAGE PROC SECT 32053 0% 57% 4
10 BIOINFORMAT COMPUTAT BIOL GRP 29212 0% 42% 5

Journals


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 BIOINFORMATICS 44454 8% 2% 184
2 JOURNAL OF COMPUTATIONAL BIOLOGY 40306 3% 4% 67
3 RNA 37100 4% 3% 82
4 NUCLEIC ACIDS RESEARCH 35378 15% 1% 316
5 ALGORITHMS FOR MOLECULAR BIOLOGY 33453 1% 9% 26
6 COMPUTER APPLICATIONS IN THE BIOSCIENCES 23392 2% 4% 39
7 RNA-A PUBLICATION OF THE RNA SOCIETY 21277 2% 3% 44
8 BMC BIOINFORMATICS 19317 5% 1% 102
9 IEEE-ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS 12647 1% 3% 32
10 JOURNAL OF BIOINFORMATICS AND COMPUTATIONAL BIOLOGY 7484 1% 4% 14

Author Key Words


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class		 LCSH search Wikipedia search
1 RNA SECONDARY STRUCTURE 686510 7% 31% 156 Search RNA+SECONDARY+STRUCTURE Search RNA+SECONDARY+STRUCTURE
2 RNA SECONDARY STRUCTURE PREDICTION 395413 2% 83% 34 Search RNA+SECONDARY+STRUCTURE+PREDICTION Search RNA+SECONDARY+STRUCTURE+PREDICTION
3 PSEUDOKNOT 348173 3% 35% 71 Search PSEUDOKNOT Search PSEUDOKNOT
4 RNA STRUCTURE PREDICTION 226251 1% 73% 22 Search RNA+STRUCTURE+PREDICTION Search RNA+STRUCTURE+PREDICTION
5 RNA MOTIF 123672 1% 42% 21 Search RNA+MOTIF Search RNA+MOTIF
6 RNA FOLDING 95906 2% 13% 51 Search RNA+FOLDING Search RNA+FOLDING
7 RNA STRUCTURE 93559 3% 9% 72 Search RNA+STRUCTURE Search RNA+STRUCTURE
8 NON WATSON CRICK BASE PAIR 74792 0% 67% 8 Search NON+WATSON+CRICK+BASE+PAIR Search NON+WATSON+CRICK+BASE+PAIR
9 K NONCROSSING RNA STRUCTURE 70123 0% 100% 5 Search K+NONCROSSING+RNA+STRUCTURE Search K+NONCROSSING+RNA+STRUCTURE
10 NEAREST NEIGHBOR PARAMETERS 70123 0% 100% 5 Search NEAREST+NEIGHBOR+PARAMETERS Search NEAREST+NEIGHBOR+PARAMETERS

Core articles
The table includes core articles in the class. The following variables is taken into account for the relevance score of an article in a cluster c:
(1) Number of references referring to publications in the class.
(2) Share of total number of active references referring to publications in the class.
(3) Age of the article. New articles get higher score than old articles.
(4) Citation rate, normalized to year.


Rank Reference # ref.
in cl.		 Shr. of ref. in
cl.		 Citations
1 LORENZ, R , BERNHART, SH , SIEDERDISSEN, CHZ , TAFER, H , FLAMM, C , STADLER, PF , HOFACKER, IL , (2011) VIENNARNA PACKAGE 2.0.ALGORITHMS FOR MOLECULAR BIOLOGY. VOL. 6. ISSUE . P. - 64 80% 454
2 LORENZ, R , WOLFINGER, MT , TANZER, A , HOFACKER, IL , (2016) PREDICTING RNA SECONDARY STRUCTURES FROM SEQUENCE AND PROBING DATA.METHODS. VOL. 103. ISSUE . P. 86 -98 92 83% 3
3 GE, P , ZHANG, SJ , (2015) COMPUTATIONAL ANALYSIS OF RNA STRUCTURES WITH CHEMICAL PROBING DATA.METHODS. VOL. 79-80. ISSUE . P. 60 -66 78 68% 9
4 ANDRONESCU, M , CONDON, A , HOOS, HH , MATHEWS, DH , MURPHY, KP , (2010) COMPUTATIONAL APPROACHES FOR RNA ENERGY PARAMETER ESTIMATION.RNA. VOL. 16. ISSUE 12. P. 2304 -2318 79 74% 34
5 KWOK, CK , TANG, Y , ASSMANN, SM , BEVILACQUA, PC , (2015) THE RNA STRUCTUROME: TRANSCRIPTOME-WIDE STRUCTURE PROBING WITH NEXT-GENERATION SEQUENCING.TRENDS IN BIOCHEMICAL SCIENCES. VOL. 40. ISSUE 4. P. 221 -232 55 71% 24
6 PUTON, T , KOZLOWSKI, LP , ROTHER, KM , BUJNICKI, JM , (2013) COMPARNA: A SERVER FOR CONTINUOUS BENCHMARKING OF AUTOMATED METHODS FOR RNA SECONDARY STRUCTURE PREDICTION.NUCLEIC ACIDS RESEARCH. VOL. 41. ISSUE 7. P. 4307-4323 58 85% 20
7 MATHEWS, DH , SABINA, J , ZUKER, M , TURNER, DH , (1999) EXPANDED SEQUENCE DEPENDENCE OF THERMODYNAMIC PARAMETERS IMPROVES PREDICTION OF RNA SECONDARY STRUCTURE.JOURNAL OF MOLECULAR BIOLOGY. VOL. 288. ISSUE 5. P. 911 -940 49 53% 2599
8 SHI, YZ , WU, YY , WANG, FH , TAN, ZJ , (2014) RNA STRUCTURE PREDICTION: PROGRESS AND PERSPECTIVE.CHINESE PHYSICS B. VOL. 23. ISSUE 7. P. - 75 68% 5
9 CAPRIOTTI, E , MARTI-RENOM, MA , (2008) COMPUTATIONAL RNA STRUCTURE PREDICTION.CURRENT BIOINFORMATICS. VOL. 3. ISSUE 1. P. 32 -45 86 68% 16
10 MACHADO-LIMA, A , DEL PORTILLO, HA , DURHAM, AM , (2008) COMPUTATIONAL METHODS IN NONCODING RNA RESEARCH.JOURNAL OF MATHEMATICAL BIOLOGY. VOL. 56. ISSUE 1-2. P. 15-49 80 71% 24

Classes with closest relation at Level 1


Rank Class id link
1 12082 RIBOSWITCH//CANC UK NUCLE ACID STRUCT GRP//RNA SWITCH
2 13926 BIOL MACROMOL STRUCT//SHEARED G CENTER DOT A PAIR//SHEARED A CENTER DOT C PAIR
3 4185 GROUP I INTRON//RIBOZYME//SELF SPLICING
4 18561 GENOTYPE PHENOTYPE MAP//ELEMENTARY LANDSCAPES//NEUTRAL NETWORKS
5 19149 LONGEST COMMON SUBSEQUENCE//TREE EDIT DISTANCE//UNORDERED TREES
6 18004 INTERACTION PROPENSITY//PROTEIN RNA INTERACTIONS//DNA BINDING RESIDUES
7 17163 Q BETA REPLICASE//RNA PHAGE//RNA BACTERIOPHAGES
8 7121 HFQ//SRNA//RYHB
9 2916 RIBOZYME//HAMMERHEAD RIBOZYME//CATALYTIC RNA
10 2338 MULTIPLE SEQUENCE ALIGNMENT//SEQUENCE ALIGNMENT//COMPUTER APPLICATIONS IN THE BIOSCIENCES

Go to start page