Class information for:
Level 1: RIBOSWITCH//CANC UK NUCLE ACID STRUCT GRP//RNA SWITCH

Basic class information
Class id #P Avg. number of
references		 Database coverage
of references
12082 933 46.2 90%


Bar chart of Publication_year

Last years might be incomplete

Hierarchy of classes
The table includes all classes above and classes immediately below the current class.


Cluster id Level Cluster label #P
5 4 CHEMISTRY, ORGANIC//CHEMISTRY, INORGANIC & NUCLEAR//CHEMISTRY, MULTIDISCIPLINARY 1745167
183 3       APTAMER//G QUADRUPLEX//RIBOZYME 56307
1185 2             RIBOZYME//RNASE P//CATALYTIC RNA 9289
12082 1                   RIBOSWITCH//CANC UK NUCLE ACID STRUCT GRP//RNA SWITCH 933

Terms with highest relevance score


rank Term termType Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 RIBOSWITCH authKW 3628937 20% 61% 183
2 CANC UK NUCLE ACID STRUCT GRP address 231629 2% 37% 19
3 RNA SWITCH authKW 230438 1% 54% 13
4 APTAZYME authKW 172822 1% 41% 13
5 ENGINEERED RIBOSWITCH authKW 163633 1% 100% 5
6 K TURN authKW 145777 1% 64% 7
7 T BOX RIBOSWITCH authKW 136359 1% 83% 5
8 ANTITERMINATION authKW 132715 2% 21% 19
9 GLYCINE RIBOSWITCH authKW 130907 0% 100% 4
10 RNA BIOPHYS CELLULAR PHYSIOL address 130907 0% 100% 4

Web of Science journal categories


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 Biochemistry & Molecular Biology 5764 64% 0% 596
2 Biophysics 459 9% 0% 84
3 Microbiology 371 10% 0% 90
4 Cell Biology 279 11% 0% 100
5 Chemistry, Medicinal 261 6% 0% 53
6 Biochemical Research Methods 227 6% 0% 57
7 Mathematical & Computational Biology 93 2% 0% 20
8 Chemistry, Multidisciplinary 74 9% 0% 83
9 Biotechnology & Applied Microbiology 68 5% 0% 48
10 Genetics & Heredity 30 4% 0% 36

Address terms


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 CANC UK NUCLE ACID STRUCT GRP 231629 2% 37% 19
2 RNA BIOPHYS CELLULAR PHYSIOL 130907 0% 100% 4
3 FUNDAMENTAL PL MOL EVOLUT 107088 1% 27% 12
4 GRP ARN RNA GRP 74800 0% 57% 4
5 STRUCT BIOL BIOPHYS IL 65453 0% 100% 2
6 BIOSYST SCI BIOENGN D BSSE 58906 0% 60% 3
7 MOL BIOPHYS BIOCHEM 53171 7% 2% 69
8 GRP ARNRNA GRP 52358 0% 40% 4
9 SINGLE MOL ANAL GRP 47322 1% 16% 9
10 RNA GRP 42196 1% 10% 13

Journals


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 RNA 32228 5% 2% 50
2 RNA BIOLOGY 15698 2% 2% 21
3 RNA-A PUBLICATION OF THE RNA SOCIETY 11314 2% 2% 21
4 BIOCHIMICA ET BIOPHYSICA ACTA-GENE REGULATORY MECHANISMS 10092 2% 2% 18
5 WILEY INTERDISCIPLINARY REVIEWS-RNA 7205 1% 2% 9
6 CHEMISTRY & BIOLOGY 7042 3% 1% 24
7 NATURE CHEMICAL BIOLOGY 6088 2% 1% 16
8 NUCLEIC ACIDS RESEARCH 5495 9% 0% 82
9 CHEMBIOCHEM 4564 3% 1% 25
10 ACS CHEMICAL BIOLOGY 2172 1% 1% 12

Author Key Words


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class		 LCSH search Wikipedia search
1 RIBOSWITCH 3628937 20% 61% 183 Search RIBOSWITCH Search RIBOSWITCH
2 RNA SWITCH 230438 1% 54% 13 Search RNA+SWITCH Search RNA+SWITCH
3 APTAZYME 172822 1% 41% 13 Search APTAZYME Search APTAZYME
4 ENGINEERED RIBOSWITCH 163633 1% 100% 5 Search ENGINEERED+RIBOSWITCH Search ENGINEERED+RIBOSWITCH
5 K TURN 145777 1% 64% 7 Search K+TURN Search K+TURN
6 T BOX RIBOSWITCH 136359 1% 83% 5 Search T+BOX+RIBOSWITCH Search T+BOX+RIBOSWITCH
7 ANTITERMINATION 132715 2% 21% 19 Search ANTITERMINATION Search ANTITERMINATION
8 GLYCINE RIBOSWITCH 130907 0% 100% 4 Search GLYCINE+RIBOSWITCH Search GLYCINE+RIBOSWITCH
9 SAM I RIBOSWITCH 130907 0% 100% 4 Search SAM+I+RIBOSWITCH Search SAM+I+RIBOSWITCH
10 ALLOSTERIC RNA 104724 0% 80% 4 Search ALLOSTERIC+RNA Search ALLOSTERIC+RNA

Core articles
The table includes core articles in the class. The following variables is taken into account for the relevance score of an article in a cluster c:
(1) Number of references referring to publications in the class.
(2) Share of total number of active references referring to publications in the class.
(3) Age of the article. New articles get higher score than old articles.
(4) Citation rate, normalized to year.


Rank Reference # ref. in
cl.		 Shr. of ref. in
cl.		 Citations
1 SERGANOV, A , PATEL, DJ , (2012) METABOLITE RECOGNITION PRINCIPLES AND MOLECULAR MECHANISMS UNDERLYING RIBOSWITCH FUNCTION.ANNUAL REVIEW OF BIOPHYSICS, VOL 41. VOL. 41. ISSUE . P. 343-370 115 86% 50
2 PESELIS, A , SERGANOV, A , (2014) THEMES AND VARIATIONS IN RIBOSWITCH STRUCTURE AND FUNCTION.BIOCHIMICA ET BIOPHYSICA ACTA-GENE REGULATORY MECHANISMS. VOL. 1839. ISSUE 10. P. 908 -918 114 80% 28
3 AGHDAM, EM , HEJAZI, MS , BARZEGAR, A , (2016) RIBOSWITCHES: FROM LIVING BIOSENSORS TO NOVEL TARGETS OF ANTIBIOTICS.GENE. VOL. 592. ISSUE 2. P. 244 -259 129 78% 0
4 SERGANOV, A , NUDLER, E , (2013) A DECADE OF RIBOSWITCHES.CELL. VOL. 152. ISSUE 1-2. P. 17-24 61 84% 228
5 BREAKER, RR , (2011) PROSPECTS FOR RIBOSWITCH DISCOVERY AND ANALYSIS.MOLECULAR CELL. VOL. 43. ISSUE 6. P. 867-879 77 77% 181
6 PORTER, EB , MARCANO-VELAZQUEZ, JG , BATEY, RT , (2014) THE PURINE RIBOSWITCH AS A MODEL SYSTEM FOR EXPLORING RNA BIOLOGY AND CHEMISTRY.BIOCHIMICA ET BIOPHYSICA ACTA-GENE REGULATORY MECHANISMS. VOL. 1839. ISSUE 10. P. 919 -930 96 76% 4
7 PEREZ-GONZALEZ, C , GRONDIN, JP , LAFONTAINE, DA , PENEDO, JC , (2016) BIOPHYSICAL APPROACHES TO BACTERIAL GENE REGULATION BY RIBOSWITCHES.BIOPHYSICS OF INFECTION. VOL. 915. ISSUE . P. 157 -191 89 79% 0
8 BLOUIN, S , MULHBACHER, J , PENEDO, JC , LAFONTAINE, DA , (2009) RIBOSWITCHES: ANCIENT AND PROMISING GENETIC REGULATORS.CHEMBIOCHEM. VOL. 10. ISSUE 3. P. 400 -416 101 73% 47
9 LUNSE, CE , SCHULLER, A , MAYER, G , (2014) THE PROMISE OF RIBOSWITCHES AS POTENTIAL ANTIBACTERIAL DRUG TARGETS.INTERNATIONAL JOURNAL OF MEDICAL MICROBIOLOGY. VOL. 304. ISSUE 1. P. 79-92 84 78% 13
10 ROTH, A , BREAKER, RR , (2009) THE STRUCTURAL AND FUNCTIONAL DIVERSITY OF METABOLITE-BINDING RIBOSWITCHES.ANNUAL REVIEW OF BIOCHEMISTRY. VOL. 78. ISSUE . P. 305 -334 78 64% 222

Classes with closest relation at Level 1


Rank Class id link
1 2673 RNA SECONDARY STRUCTURE//RNA SECONDARY STRUCTURE PREDICTION//PSEUDOKNOT
2 36765 PROGRAM BIOCHEM CHEM//2 SELENOURIDINE TRIPHOSPHATE//3 5 O DIACETYL 5 AMINOMETHYL 2 DEOXYURIDINE
3 7960 SYNTHETIC BIOLOGY//ACS SYNTHETIC BIOLOGY//GENETIC CIRCUITS
4 11256 DEOXYRIBOZYME//DNAZYME//CATALYTIC DNA
5 2916 RIBOZYME//HAMMERHEAD RIBOZYME//CATALYTIC RNA
6 24309 HISTIDASE//HISTIDINEMIA//HUTP
7 4185 GROUP I INTRON//RIBOZYME//SELF SPLICING
8 7121 HFQ//SRNA//RYHB
9 23884 RIBOSOMAL PROTEIN L1//RPMG//L1 CONFORMATIONS
10 18145 RIBOSE AND NUCLEOBASE//ALTERNATE SITE SPECIFIC LABELING//DEUTERATED NUCLEOSIDES

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