Class information for:
Level 1: INTRON GAIN//INTRON LOSS//INTRON EVOLUTION

Basic class information
Class id #P Avg. number of
references		 Database coverage
of references
17904 576 44.0 85%


Bar chart of Publication_year

Last years might be incomplete

Hierarchy of classes
The table includes all classes above and classes immediately below the current class.


Cluster id Level Cluster label #P
0 4 BIOCHEMISTRY & MOLECULAR BIOLOGY//CELL BIOLOGY//ONCOLOGY 4064930
90 3       MATHEMATICAL & COMPUTATIONAL BIOLOGY//BIOINFORMATICS//BMC BIOINFORMATICS 77178
126 2             MOLECULAR BIOLOGY AND EVOLUTION//BIOINFORMATICS//MATHEMATICAL & COMPUTATIONAL BIOLOGY 23963
17904 1                   INTRON GAIN//INTRON LOSS//INTRON EVOLUTION 576

Terms with highest relevance score


rank Term termType Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 INTRON GAIN authKW 1259418 5% 85% 28
2 INTRON LOSS authKW 644061 5% 45% 27
3 INTRON EVOLUTION authKW 566005 5% 34% 31
4 INTRONS EARLY authKW 378648 2% 71% 10
5 SPLICEOSOMAL INTRON authKW 346974 2% 55% 12
6 INTRONS LATE authKW 339271 1% 80% 8
7 INTRON PHASE authKW 324694 1% 88% 7
8 EXON SHUFFLING authKW 231433 4% 21% 21
9 PROTO SPLICE SITE authKW 220880 1% 83% 5
10 INTRON FUNCTION authKW 212046 1% 100% 4

Web of Science journal categories


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 Genetics & Heredity 9677 53% 0% 308
2 Evolutionary Biology 7268 24% 0% 136
3 Biochemistry & Molecular Biology 2526 55% 0% 315
4 Mathematical & Computational Biology 1374 9% 0% 53
5 Biology 492 9% 0% 51
6 Biotechnology & Applied Microbiology 395 12% 0% 71
7 Cell Biology 262 13% 0% 73
8 Biochemical Research Methods 169 7% 0% 38
9 Biophysics 95 6% 0% 33
10 Parasitiology 2 1% 0% 4

Address terms


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 GENET MOL BIOL BOT 127221 1% 40% 6
2 NCSV 121166 1% 57% 4
3 ALLAN WILSON MOL EVOLUT ECOL 95418 1% 60% 3
4 MOE BIO ERS SCI ECOL ENGN 80333 2% 13% 12
5 SAO PAULO BRANCH 64772 2% 11% 11
6 BEIJING GENE OURCE MOL DEV 60397 1% 16% 7
7 AGRIGEN PROGRAM 53012 0% 100% 1
8 ANAT PATOL CIENCIES FORENSES 53012 0% 100% 1
9 BIOINFORMAT GENOM PROTE PROGRAM 53012 0% 100% 1
10 BIOL IGSP 53012 0% 100% 1

Journals


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 MOLECULAR BIOLOGY AND EVOLUTION 25701 9% 1% 52
2 BIOLOGY DIRECT 11557 2% 2% 11
3 JOURNAL OF MOLECULAR EVOLUTION 10882 5% 1% 28
4 TRENDS IN GENETICS 8579 4% 1% 21
5 GENOME BIOLOGY AND EVOLUTION 7680 2% 1% 14
6 BMC EVOLUTIONARY BIOLOGY 6991 4% 1% 21
7 BIOTECHFORUM ( BTF ) 3444 2% 1% 13
8 GENETICA 1770 2% 0% 10
9 BIOINFORMATICS 1769 3% 0% 19
10 GENOME BIOLOGY 1424 2% 0% 9

Author Key Words


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class		 LCSH search Wikipedia search
1 INTRON GAIN 1259418 5% 85% 28 Search INTRON+GAIN Search INTRON+GAIN
2 INTRON LOSS 644061 5% 45% 27 Search INTRON+LOSS Search INTRON+LOSS
3 INTRON EVOLUTION 566005 5% 34% 31 Search INTRON+EVOLUTION Search INTRON+EVOLUTION
4 INTRONS EARLY 378648 2% 71% 10 Search INTRONS+EARLY Search INTRONS+EARLY
5 SPLICEOSOMAL INTRON 346974 2% 55% 12 Search SPLICEOSOMAL+INTRON Search SPLICEOSOMAL+INTRON
6 INTRONS LATE 339271 1% 80% 8 Search INTRONS+LATE Search INTRONS+LATE
7 INTRON PHASE 324694 1% 88% 7 Search INTRON+PHASE Search INTRON+PHASE
8 EXON SHUFFLING 231433 4% 21% 21 Search EXON+SHUFFLING Search EXON+SHUFFLING
9 PROTO SPLICE SITE 220880 1% 83% 5 Search PROTO+SPLICE+SITE Search PROTO+SPLICE+SITE
10 INTRON FUNCTION 212046 1% 100% 4 Search INTRON+FUNCTION Search INTRON+FUNCTION

Core articles
The table includes core articles in the class. The following variables is taken into account for the relevance score of an article in a cluster c:
(1) Number of references referring to publications in the class.
(2) Share of total number of active references referring to publications in the class.
(3) Age of the article. New articles get higher score than old articles.
(4) Citation rate, normalized to year.


Rank Reference # ref. in
cl.		 Shr. of ref. in
cl.		 Citations
1 ROGOZIN, IB , CARMEL, L , CSUROS, M , KOONIN, EV , (2012) ORIGIN AND EVOLUTION OF SPLICEOSOMAL INTRONS.BIOLOGY DIRECT. VOL. 7. ISSUE . P. - 123 45% 69
2 ROY, SW , GILBERT, W , (2006) THE EVOLUTION OF SPLICEOSOMAL INTRONS: PATTERNS, PUZZLES AND PROGRESS.NATURE REVIEWS GENETICS. VOL. 7. ISSUE 3. P. 211 -221 67 64% 279
3 ROY, SW , PENNY, D , (2007) A VERY HIGH FRACTION OF UNIQUE INTRON POSITIONS IN THE INTRON-RICH DIATOM THALASSIOSIRA PSEUDONANA INDICATES WIDESPREAD INTRON GAIN.MOLECULAR BIOLOGY AND EVOLUTION. VOL. 24. ISSUE 7. P. 1447 -1457 63 81% 18
4 ROY, SW , PENNY, D , (2007) PATTERNS OF INTRON LOSS AND GAIN IN PLANTS: INTRON LOSS-DOMINATED EVOLUTION AND GENOME-WIDE COMPARISON OF O-SATIVA AND A-THALIANA.MOLECULAR BIOLOGY AND EVOLUTION. VOL. 24. ISSUE 1. P. 171 -181 52 81% 73
5 RODRIGUEZ-TRELLES, F , TARRIO, R , AYALA, FJ , (2006) ORIGINS AND EVOLUTION OF SPLICEOSOMAL INTRONS.ANNUAL REVIEW OF GENETICS. VOL. 40. ISSUE . P. 47 -76 88 46% 108
6 ROY, SW , GILBERT, W , (2005) RATES OF INTRON LOSS AND GAIN: IMPLICATIONS FOR EARLY EUKARYOTIC EVOLUTION.PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. VOL. 102. ISSUE 16. P. 5773 -5778 48 80% 118
7 DA LAGE, JL , MACZKOWIAK, F , CARIOU, ML , (2011) PHYLOGENETIC DISTRIBUTION OF INTRON POSITIONS IN ALPHAAMYLASE GENES OF BILATERIA SUGGESTS NUMEROUS GAINS AND LOSSES.PLOS ONE. VOL. 6. ISSUE 5. P. - 56 60% 11
8 COHEN, NE , SHEN, R , CARMEL, L , (2012) THE ROLE OF REVERSE TRANSCRIPTASE IN INTRON GAIN AND LOSS MECHANISMS.MOLECULAR BIOLOGY AND EVOLUTION. VOL. 29. ISSUE 1. P. 179 -186 41 79% 12
9 ZHU, T , NIU, DK , (2013) MECHANISMS OF INTRON LOSS AND GAIN IN THE FISSION YEAST SCHIZOSACCHAROMYCES.PLOS ONE. VOL. 8. ISSUE 4. P. - 41 76% 5
10 ZHU, T , NIU, DK , (2013) FREQUENCY OF INTRON LOSS CORRELATES WITH PROCESSED PSEUDOGENE ABUNDANCE: A NOVEL STRATEGY TO TEST THE REVERSE TRANSCRIPTASE MODEL OF INTRON LOSS.BMC BIOLOGY. VOL. 11. ISSUE . P. - 46 66% 6

Classes with closest relation at Level 1


Rank Class id link
1 28145 INTRON MEDIATED ENHANCEMENT//INTRON//IME
2 24117 EVOLUTIONARY BIOINFORMAT//FOLD SUPERFAMILY//EVOLUTION OF DOMAIN ARCHITECTURE
3 35727 CLOSED LOOPS//GENOME ERS//SKEW PAIRS
4 28425 PROCESSED PSEUDOGENES//CYP4Z2P//DUPLICATED PSEUDOGENES
5 3668 SPLICEOSOME//PRE MRNA SPLICING//SNRNP
6 16263 INTRALOCUS SEXUAL CONFLICT//SEX BIASED GENE EXPRESSION//SEXUAL ANTAGONISM
7 785 SR PROTEINS//ALTERNATIVE SPLICING//POLYPYRIMIDINE TRACT BINDING PROTEIN
8 37162 UNIT HISTOL EMBRYOL PL BIOL//CAENORHABDITIS ELEGANS OLFACTORY NEURONS//CODONOME
9 11342 GENE PREDICTION//GENE FINDING//GENE RECOGNITION
10 8300 WHOLE GENOME DUPLICATION//GENOME DUPLICATION//GENE DUPLICATION

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