Class information for:
Level 1: PRENYLTRANSFERASE//FARNESYL DIPHOSPHATE SYNTHASE//GERANYLGERANYL DIPHOSPHATE SYNTHASE

Basic class information
Class id #P Avg. number of
references		 Database coverage
of references
19056 524 33.0 71%


Bar chart of Publication_year

Last years might be incomplete

Hierarchy of classes
The table includes all classes above and classes immediately below the current class.


Cluster id Level Cluster label #P
3 4 PLANT SCIENCES//AGRONOMY//FOOD SCIENCE & TECHNOLOGY 1882812
680 3       HEVEA BRASILIENSIS//ISOPRENOID BIOSYNTHESIS//GUAYULE 8761
1585 2             ISOPRENOID BIOSYNTHESIS//ISOPRENOIDS//TERPENE SYNTHASE 7221
19056 1                   PRENYLTRANSFERASE//FARNESYL DIPHOSPHATE SYNTHASE//GERANYLGERANYL DIPHOSPHATE SYNTHASE 524

Terms with highest relevance score


rank Term termType Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 PRENYLTRANSFERASE authKW 1818008 15% 40% 78
2 FARNESYL DIPHOSPHATE SYNTHASE authKW 1145598 9% 44% 45
3 GERANYLGERANYL DIPHOSPHATE SYNTHASE authKW 786651 5% 50% 27
4 ISOPRENYL DIPHOSPHATE SYNTHASE authKW 559411 2% 80% 12
5 GERANYL DIPHOSPHATE SYNTHASE authKW 518310 2% 68% 13
6 UNDECAPRENYL DIPHOSPHATE SYNTHASE authKW 356917 1% 88% 7
7 PRENYL DIPHOSPHATE SYNTHASE authKW 337141 2% 64% 9
8 BIOL MAT CHEM address 317258 1% 78% 7
9 HOMOLOGS OF ISOPENTENYL DIPHOSPHATE authKW 233090 1% 100% 4
10 GERANYLFARNESYL DIPHOSPHATE SYNTHASE authKW 174817 1% 100% 3

Web of Science journal categories


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 Biochemistry & Molecular Biology 3307 65% 0% 338
2 Biophysics 589 13% 0% 68
3 Plant Sciences 382 13% 0% 69
4 Biochemical Research Methods 118 6% 0% 31
5 Biotechnology & Applied Microbiology 106 7% 0% 39
6 Chemistry, Medicinal 88 5% 0% 24
7 Chemistry, Organic 55 6% 0% 33
8 Entomology 52 3% 0% 15
9 Chemistry, Multidisciplinary 46 9% 0% 48
10 Cell Biology 23 6% 0% 29

Address terms


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 BIOL MAT CHEM 317258 1% 78% 7
2 BIOL CELLULAIRE BIOTECHNOL VEGET 58272 0% 100% 1
3 BIOL VEGET MOL 58272 0% 100% 1
4 BIOTECHNOL NAT PROD METAB ENGN 58272 0% 100% 1
5 BUSINESS UNIT PRI BIOSCI 58272 0% 100% 1
6 CHEM NON AQUEOUS SOLUT KATAHIRA 211 58272 0% 100% 1
7 FRONTIER PROGRAM PLANT HORMONE FUNCT 58272 0% 100% 1
8 INTERGRATED BIOSCI 58272 0% 100% 1
9 LEHRSTUHL PHYSIOL BIOCHEM PFLANZEN POB 5560 58272 0% 100% 1
10 MOL BIOL FUNCT 58272 0% 100% 1

Journals


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 JOURNAL OF BIOCHEMISTRY 3645 5% 0% 26
2 INSECT BIOCHEMISTRY AND MOLECULAR BIOLOGY 2372 2% 0% 11
3 JOURNAL OF MOLECULAR CATALYSIS B-ENZYMATIC 2050 2% 0% 11
4 JOURNAL OF BIOLOGICAL CHEMISTRY 792 9% 0% 47
5 BIOCHEMISTRY 760 5% 0% 27
6 METHODS IN ENZYMOLOGY 679 3% 0% 14
7 ARCHIVES OF BIOCHEMISTRY AND BIOPHYSICS 651 3% 0% 14
8 JOURNAL OF MARINE BIOTECHNOLOGY 599 0% 1% 1
9 BIOSCIENCE BIOTECHNOLOGY AND BIOCHEMISTRY 468 2% 0% 10
10 PLANT PHYSIOLOGY 379 2% 0% 12

Author Key Words


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class		 LCSH search Wikipedia search
1 PRENYLTRANSFERASE 1818008 15% 40% 78 Search PRENYLTRANSFERASE Search PRENYLTRANSFERASE
2 FARNESYL DIPHOSPHATE SYNTHASE 1145598 9% 44% 45 Search FARNESYL+DIPHOSPHATE+SYNTHASE Search FARNESYL+DIPHOSPHATE+SYNTHASE
3 GERANYLGERANYL DIPHOSPHATE SYNTHASE 786651 5% 50% 27 Search GERANYLGERANYL+DIPHOSPHATE+SYNTHASE Search GERANYLGERANYL+DIPHOSPHATE+SYNTHASE
4 ISOPRENYL DIPHOSPHATE SYNTHASE 559411 2% 80% 12 Search ISOPRENYL+DIPHOSPHATE+SYNTHASE Search ISOPRENYL+DIPHOSPHATE+SYNTHASE
5 GERANYL DIPHOSPHATE SYNTHASE 518310 2% 68% 13 Search GERANYL+DIPHOSPHATE+SYNTHASE Search GERANYL+DIPHOSPHATE+SYNTHASE
6 UNDECAPRENYL DIPHOSPHATE SYNTHASE 356917 1% 88% 7 Search UNDECAPRENYL+DIPHOSPHATE+SYNTHASE Search UNDECAPRENYL+DIPHOSPHATE+SYNTHASE
7 PRENYL DIPHOSPHATE SYNTHASE 337141 2% 64% 9 Search PRENYL+DIPHOSPHATE+SYNTHASE Search PRENYL+DIPHOSPHATE+SYNTHASE
8 HOMOLOGS OF ISOPENTENYL DIPHOSPHATE 233090 1% 100% 4 Search HOMOLOGS+OF+ISOPENTENYL+DIPHOSPHATE Search HOMOLOGS+OF+ISOPENTENYL+DIPHOSPHATE
9 GERANYLFARNESYL DIPHOSPHATE SYNTHASE 174817 1% 100% 3 Search GERANYLFARNESYL+DIPHOSPHATE+SYNTHASE Search GERANYLFARNESYL+DIPHOSPHATE+SYNTHASE
10 HEXAPRENYL DIPHOSPHATE SYNTHASE 174817 1% 100% 3 Search HEXAPRENYL+DIPHOSPHATE+SYNTHASE Search HEXAPRENYL+DIPHOSPHATE+SYNTHASE

Core articles
The table includes core articles in the class. The following variables is taken into account for the relevance score of an article in a cluster c:
(1) Number of references referring to publications in the class.
(2) Share of total number of active references referring to publications in the class.
(3) Age of the article. New articles get higher score than old articles.
(4) Citation rate, normalized to year.


Rank Reference # ref.
in cl.		 Shr. of ref. in
cl.		 Citations
1 VANDERMOTEN, S , HAUBRUGE, E , CUSSON, M , (2009) NEW INSIGHTS INTO SHORT-CHAIN PRENYLTRANSFERASES: STRUCTURAL FEATURES, EVOLUTIONARY HISTORY AND POTENTIAL FOR SELECTIVE INHIBITION.CELLULAR AND MOLECULAR LIFE SCIENCES. VOL. 66. ISSUE 23. P. 3685 -3695 60 73% 35
2 OGURA, K , KOYAMA, T , (1998) ENZYMATIC ASPECTS OF ISOPRENOID CHAIN ELONGATION.CHEMICAL REVIEWS. VOL. 98. ISSUE 4. P. 1263 -1276 61 75% 210
3 SASAKI, D , FUJIHASHI, M , OKUYAMA, N , KOBAYASHI, Y , NOIKE, M , KOYAMA, T , MIKI, K , (2011) CRYSTAL STRUCTURE OF HETERODIMERIC HEXAPRENYL DIPHOSPHATE SYNTHASE FROM MICROCOCCUS LUTEUS B-P 26 REVEALS THAT THE SMALL SUBUNIT IS DIRECTLY INVOLVED IN THE PRODUCT CHAIN LENGTH REGULATION.JOURNAL OF BIOLOGICAL CHEMISTRY. VOL. 286. ISSUE 5. P. 3729 -3740 54 65% 5
4 WANG, KC , OHNUMA, S , (2000) ISOPRENYL DIPHOSPHATE SYNTHASES.BIOCHIMICA ET BIOPHYSICA ACTA-MOLECULAR AND CELL BIOLOGY OF LIPIDS. VOL. 1529. ISSUE 1-3. P. 33-48 58 72% 75
5 SZKOPINSKA, A , PLOCHOCKA, D , (2005) FARNESYL DIPHOSPHATE SYNTHASE; REGULATION OF PRODUCT SPECIFICITY.ACTA BIOCHIMICA POLONICA. VOL. 52. ISSUE 1. P. 45-55 42 84% 59
6 DHAR, MK , KOUL, A , KAUL, S , (2013) FARNESYL PYROPHOSPHATE SYNTHASE: A KEY ENZYME IN ISOPRENOID BIOSYNTHETIC PATHWAY AND POTENTIAL MOLECULAR TARGET FOR DRUG DEVELOPMENT.NEW BIOTECHNOLOGY. VOL. 30. ISSUE 2. P. 114-123 46 55% 23
7 MAKI, Y , NAGAKI, M , NISHINO, T , KOYAMA, T , (2002) USEFULNESS OF PRENYLTRANSFERASE FOR ORGANIC SYNTHESIS: CARBON-CARBON BOND FORMING REACTIONS BY PRENYLTRANSFERASES AND THEIR MUTATED ENZYMES.JOURNAL OF SYNTHETIC ORGANIC CHEMISTRY JAPAN. VOL. 60. ISSUE 8. P. 783 -793 31 97% 0
8 KOYAMA, T , GOTOH, Y , NISHINO, T , (2000) INTERSUBUNIT LOCATION OF THE ACTIVE SITE OF FARNESYL DIPHOSPHATE SYNTHASE: RECONSTRUCTION OF ACTIVE ENZYMES BY HYBRID-TYPE HETEROMERIC DIMERS OF SITE-DIRECTED MUTANTS.BIOCHEMISTRY. VOL. 39. ISSUE 2. P. 463-469 30 100% 15
9 CHANG, TH , HSIEH, FL , KO, TP , TENG, KH , LIANG, PH , WANG, AHJ , (2010) STRUCTURE OF A HETEROTETRAMERIC GERANYL PYROPHOSPHATE SYNTHASE FROM MINT (MENTHA PIPERITA) REVEALS INTERSUBUNIT REGULATION.PLANT CELL. VOL. 22. ISSUE 2. P. 454 -467 38 55% 32
10 ZHANG, H , LI, ZX , (2014) A TYPE-III INSECT GERANYLGERANYL DIPHOSPHATE SYNTHASE WITH A NOVEL CATALYTIC PROPERTY.PROTEIN AND PEPTIDE LETTERS. VOL. 21. ISSUE 7. P. 615-623 30 70% 0

Classes with closest relation at Level 1


Rank Class id link
1 7013 TERPENE SYNTHASE//MONOTERPENE SYNTHASE//SESQUITERPENE SYNTHASE
2 8024 ISOPRENOID BIOSYNTHESIS//FOSMIDOMYCIN//ISOPENTENYL DIPHOSPHATE
3 19834 SQUALENE SYNTHASE//SQUALENE SYNTHASE INHIBITOR//ZARAGOZIC ACIDS
4 5553 DOLICHOL//POLYPRENOLS//OLIGOSACCHARYLTRANSFERASE
5 14042 GUAYULE//PARTHENIUM ARGENTATUM//RUBBER TRANSFERASE
6 21068 PHARMAZEUT BIOL BIOTECHNOL//PRENYLTRANSFERASE//DIMETHYLALLYLTRYPTOPHAN SYNTHASE
7 24016 MEVALONATE DIPHOSPHATE DECARBOXYLASE//MEVALONATE PYROPHOSPHATE DECARBOXYLASE//MEVALONATE KINASE
8 5389 BIOSYNTH GRP//PHYTOENE SYNTHASE//CAROTENOID BIOSYNTHESIS
9 2877 FARNESYLTRANSFERASE//FARNESYLTRANSFERASE INHIBITOR//PROTEIN FARNESYLTRANSFERASE
10 2746 BISPHOSPHONATES//ZOLEDRONIC ACID//ALENDRONATE

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