Class information for:
Level 1: ESSENTIAL GENES//TN SEQ//SUBTRACTIVE GENOMICS

Basic class information
Class id #P Avg. number of
references		 Database coverage
of references
19843 487 44.4 84%


Bar chart of Publication_year

Last years might be incomplete

Hierarchy of classes
The table includes all classes above and classes immediately below the current class.


Cluster id Level Cluster label #P
0 4 BIOCHEMISTRY & MOLECULAR BIOLOGY//CELL BIOLOGY//ONCOLOGY 4064930
389 3       PEROXISOME//CARNITINE//JOURNAL OF INHERITED METABOLIC DISEASE 30841
3076 2             PEPTIDE DEFORMYLASE//ENOYL ACP REDUCTASE//ACYL CARRIER PROTEIN 2395
19843 1                   ESSENTIAL GENES//TN SEQ//SUBTRACTIVE GENOMICS 487

Terms with highest relevance score


rank Term termType Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 ESSENTIAL GENES authKW 610103 9% 23% 43
2 TN SEQ authKW 236324 1% 54% 7
3 SUBTRACTIVE GENOMICS authKW 225715 1% 60% 6
4 MINIMAL GENOME authKW 188088 2% 33% 9
5 ALLELIC REPLACEMENT MUTAGENESIS authKW 125400 0% 100% 2
6 COMPUTATIONAL COMPARATIVE GENOMICS authKW 125400 0% 100% 2
7 ESSENTIAL GENE PREDICTION authKW 125400 0% 100% 2
8 ESSENTIAL GENOME authKW 125400 0% 100% 2
9 IN SILICO DRUG TARGETS authKW 125400 0% 100% 2
10 KAAS SERVER authKW 125400 0% 100% 2

Web of Science journal categories


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 Microbiology 3132 34% 0% 165
2 Biotechnology & Applied Microbiology 1390 23% 0% 114
3 Genetics & Heredity 784 18% 0% 86
4 Biochemical Research Methods 467 11% 0% 54
5 Biochemistry & Molecular Biology 436 28% 0% 135
6 Mathematical & Computational Biology 341 5% 0% 25
7 Pharmacology & Pharmacy 67 9% 0% 46
8 Infectious Diseases 34 3% 0% 16
9 Biophysics 24 4% 0% 18
10 Biology 14 2% 0% 11

Address terms


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 SECTOR AGR MICROBIOL AGRIFOOD TECHNOL 125400 0% 100% 2
2 SECTOR FOOD TECHNOL 125400 0% 100% 2
3 STRATEG TRAINING PROGRAM BIOINFORMAT 125400 0% 100% 2
4 4MD 62700 0% 100% 1
5 ANTIBACT 62700 0% 100% 1
6 ANTIMICROBIALS HOST DEFENCE CEDD 62700 0% 100% 1
7 BIOINFONNAT SCI TECHNOL 62700 0% 100% 1
8 CHIM BIOIND 62700 0% 100% 1
9 FG GARUNGSTECHNOL FERMENTAT TECHNOL 62700 0% 100% 1
10 GENOME EXP S 62700 0% 100% 1

Journals


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 CURRENT OPINION IN MICROBIOLOGY 9895 3% 1% 17
2 MBIO 2276 2% 0% 8
3 TRENDS IN MICROBIOLOGY 2225 2% 0% 8
4 JOURNAL OF BIOINFORMATICS AND COMPUTATIONAL BIOLOGY 1536 1% 1% 3
5 CURRENT OPINION IN BIOTECHNOLOGY 1315 1% 0% 7
6 JOURNAL OF MICROBIOLOGICAL METHODS 1283 2% 0% 10
7 MICROBIAL CELL FACTORIES 1151 1% 0% 5
8 COMPUTATIONAL BIOLOGY AND CHEMISTRY 1139 1% 0% 4
9 BMC GENOMICS 1087 3% 0% 13
10 ANNUAL REVIEW OF GENOMICS AND HUMAN GENETICS 777 0% 1% 2

Author Key Words


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class		 LCSH search Wikipedia search
1 ESSENTIAL GENES 610103 9% 23% 43 Search ESSENTIAL+GENES Search ESSENTIAL+GENES
2 TN SEQ 236324 1% 54% 7 Search TN+SEQ Search TN+SEQ
3 SUBTRACTIVE GENOMICS 225715 1% 60% 6 Search SUBTRACTIVE+GENOMICS Search SUBTRACTIVE+GENOMICS
4 MINIMAL GENOME 188088 2% 33% 9 Search MINIMAL+GENOME Search MINIMAL+GENOME
5 ALLELIC REPLACEMENT MUTAGENESIS 125400 0% 100% 2 Search ALLELIC+REPLACEMENT+MUTAGENESIS Search ALLELIC+REPLACEMENT+MUTAGENESIS
6 COMPUTATIONAL COMPARATIVE GENOMICS 125400 0% 100% 2 Search COMPUTATIONAL+COMPARATIVE+GENOMICS Search COMPUTATIONAL+COMPARATIVE+GENOMICS
7 ESSENTIAL GENE PREDICTION 125400 0% 100% 2 Search ESSENTIAL+GENE+PREDICTION Search ESSENTIAL+GENE+PREDICTION
8 ESSENTIAL GENOME 125400 0% 100% 2 Search ESSENTIAL+GENOME Search ESSENTIAL+GENOME
9 IN SILICO DRUG TARGETS 125400 0% 100% 2 Search IN+SILICO+DRUG+TARGETS Search IN+SILICO+DRUG+TARGETS
10 KAAS SERVER 125400 0% 100% 2 Search KAAS+SERVER Search KAAS+SERVER

Core articles
The table includes core articles in the class. The following variables is taken into account for the relevance score of an article in a cluster c:
(1) Number of references referring to publications in the class.
(2) Share of total number of active references referring to publications in the class.
(3) Age of the article. New articles get higher score than old articles.
(4) Citation rate, normalized to year.


Rank Reference # ref.
in cl.		 Shr. of ref. in
cl.		 Citations
1 LUO, H , LIN, Y , GAO, F , ZHANG, CT , ZHANG, R , (2014) DEG 10, AN UPDATE OF THE DATABASE OF ESSENTIAL GENES THAT INCLUDES BOTH PROTEIN-CODING GENES AND NONCODING GENOMIC ELEMENTS.NUCLEIC ACIDS RESEARCH. VOL. 42. ISSUE D1. P. D574-D580 36 49% 77
2 LU, Y , DENG, JY , CARSON, MB , LU, H , LU, LJ , (2014) COMPUTATIONAL METHODS FOR THE PREDICTION OF MICROBIAL ESSENTIAL GENES.CURRENT BIOINFORMATICS. VOL. 9. ISSUE 2. P. 89 -101 38 42% 1
3 ZHANG, R , LIN, Y , (2009) DEG 5.0, A DATABASE OF ESSENTIAL GENES IN BOTH PROKARYOTES AND EUKARYOTES.NUCLEIC ACIDS RESEARCH. VOL. 37. ISSUE . P. D455 -D458 21 54% 182
4 DENG, JY , SU, SC , LIN, XD , HASSETT, DJ , LU, LJ , (2013) A STATISTICAL FRAMEWORK FOR IMPROVING GENOMIC ANNOTATIONS OF PROKARYOTIC ESSENTIAL GENES.PLOS ONE. VOL. 8. ISSUE 3. P. - 24 56% 6
5 GAO, F , ZHANG, RR , (2011) ENZYMES ARE ENRICHED IN BACTERIAL ESSENTIAL GENES.PLOS ONE. VOL. 6. ISSUE 6. P. - 22 59% 6
6 WEI, W , NING, LW , YE, YN , GUO, FB , (2013) GEPTOP: A GENE ESSENTIALITY PREDICTION TOOL FOR SEQUENCED BACTERIAL GENOMES BASED ON ORTHOLOGY AND PHYLOGENY.PLOS ONE. VOL. 8. ISSUE 8. P. - 24 51% 5
7 LIN, Y , ZHANG, RR , (2011) PUTATIVE ESSENTIAL AND CORE-ESSENTIAL GENES IN MYCOPLASMA GENOMES.SCIENTIFIC REPORTS. VOL. 1. ISSUE . P. - 19 66% 12
8 RICKE, SC , MANDAL, RK , KWON, YM , (2016) TRANSPOSON SEQUENCING: METHODS AND EXPANDING APPLICATIONS.APPLIED MICROBIOLOGY AND BIOTECHNOLOGY. VOL. 100. ISSUE 1. P. 31 -43 28 32% 4
9 CHAO, MC , ABEL, S , DAVIS, BM , WALDOR, MK , (2016) THE DESIGN AND ANALYSIS OF TRANSPOSON INSERTION SEQUENCING EXPERIMENTS.NATURE REVIEWS MICROBIOLOGY. VOL. 14. ISSUE 2. P. 119 -128 24 40% 2
10 CHENG, J , XU, Z , WU, WW , ZHAO, L , LI, XC , LIU, YL , TAO, SH , (2014) TRAINING SET SELECTION FOR THE PREDICTION OF ESSENTIAL GENES.PLOS ONE. VOL. 9. ISSUE 1. P. - 23 46% 3

Classes with closest relation at Level 1


Rank Class id link
1 15355 BANTING BEST MED//SYNTHETIC DOSAGE LETHALITY//GENETIC INTERACTION
2 30519 PLATENSIMYCIN//PLATENCIN//STREPTOMYCES PLATENSIS
3 23535 PEPTIDE DEFORMYLASE//PEPTIDE DEFORMYLASE INHIBITORS//DEFORMYLASE
4 21689 OBG//RBFA//DRG2
5 2029 FLUX BALANCE ANALYSIS//METABOLIC NETWORK//CONSTRAINT BASED MODELING
6 35667 GENETIC INSTRUCTIONS//EXCLUSION ZONE EZ//BIOLOGICAL DENITRIFICATION INHIBITION
7 22783 BIDIRECTIONAL PROMOTER//OPERON PREDICTION//INTERGENIC DISTANCE
8 12753 T VECTOR//TA CLONING//GENE SYNTHESIS
9 10837 MUR LIGASES//MOENOMYCIN//MRAY
10 16690 YEAST//CHROMOSOME XIV//CHROMOSOME XV

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