Class information for:
Level 1: BIDIRECTIONAL PROMOTER//OPERON PREDICTION//INTERGENIC DISTANCE

Basic class information
Class id #P Avg. number of
references		 Database coverage
of references
22783 369 38.9 87%


Bar chart of Publication_year

Last years might be incomplete

Hierarchy of classes
The table includes all classes above and classes immediately below the current class.


Cluster id Level Cluster label #P
0 4 BIOCHEMISTRY & MOLECULAR BIOLOGY//CELL BIOLOGY//ONCOLOGY 4064930
90 3       MATHEMATICAL & COMPUTATIONAL BIOLOGY//BIOINFORMATICS//BMC BIOINFORMATICS 77178
126 2             MOLECULAR BIOLOGY AND EVOLUTION//BIOINFORMATICS//MATHEMATICAL & COMPUTATIONAL BIOLOGY 23963
22783 1                   BIDIRECTIONAL PROMOTER//OPERON PREDICTION//INTERGENIC DISTANCE 369

Terms with highest relevance score


rank Term termType Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 BIDIRECTIONAL PROMOTER authKW 579902 8% 24% 29
2 OPERON PREDICTION authKW 220666 1% 67% 4
3 INTERGENIC DISTANCE authKW 186188 1% 75% 3
4 CONSERVED GENE PAIR authKW 165502 1% 100% 2
5 UNIDIRECTIONAL PROMOTER authKW 165502 1% 100% 2
6 OPERONS authKW 165490 2% 25% 8
7 OPERON authKW 123135 4% 9% 16
8 NEIGHBORING GENES authKW 110333 1% 67% 2
9 452 BP PROMOTER authKW 82751 0% 100% 1
10 ALG12 authKW 82751 0% 100% 1

Web of Science journal categories


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 Genetics & Heredity 4612 46% 0% 171
2 Mathematical & Computational Biology 3554 18% 0% 67
3 Biotechnology & Applied Microbiology 2271 34% 0% 124
4 Biochemistry & Molecular Biology 715 38% 0% 141
5 Biochemical Research Methods 700 15% 0% 56
6 Evolutionary Biology 589 9% 0% 32
7 Biology 18 3% 0% 10
8 Cell Biology 18 6% 0% 21
9 Plant Sciences 17 5% 0% 17
10 Biophysics 12 3% 0% 12

Address terms


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 BIOL CELULAR BIOCATALISIS 82751 0% 100% 1
2 BIOL SCI BIOTECHNOLPROT SCI 82751 0% 100% 1
3 COMPUTAT MODELING SIMULAT UNIT 82751 0% 100% 1
4 DPTO ECOL EVOLUC 82751 0% 100% 1
5 EPIGENOM DNA FUNCT 82751 0% 100% 1
6 FRAUNHOFER TOXICOL EXPT MED FH ITEM 82751 0% 100% 1
7 GENET CELLULAR MOL MED 82751 0% 100% 1
8 GENET MAMMIFE 82751 0% 100% 1
9 GENOT 82751 0% 100% 1
10 HUMAN GENOMERIKENGENOM SCI 82751 0% 100% 1

Journals


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 BMC GENOMICS 9402 9% 0% 33
2 BIOTECHFORUM ( BTF ) 6254 4% 1% 14
3 BMC BIOINFORMATICS 3958 5% 0% 19
4 BIOINFORMATICS 3736 6% 0% 22
5 TRENDS IN GENETICS 3031 3% 0% 10
6 MOLECULAR BIOLOGY AND EVOLUTION 2892 4% 0% 14
7 NUCLEIC ACIDS RESEARCH 2251 9% 0% 33
8 BMC MOLECULAR BIOLOGY 1741 1% 1% 4
9 GENOME BIOLOGY AND EVOLUTION 1525 1% 0% 5
10 GENOME BIOLOGY 1348 2% 0% 7

Author Key Words


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class		 LCSH search Wikipedia search
1 BIDIRECTIONAL PROMOTER 579902 8% 24% 29 Search BIDIRECTIONAL+PROMOTER Search BIDIRECTIONAL+PROMOTER
2 OPERON PREDICTION 220666 1% 67% 4 Search OPERON+PREDICTION Search OPERON+PREDICTION
3 INTERGENIC DISTANCE 186188 1% 75% 3 Search INTERGENIC+DISTANCE Search INTERGENIC+DISTANCE
4 CONSERVED GENE PAIR 165502 1% 100% 2 Search CONSERVED+GENE+PAIR Search CONSERVED+GENE+PAIR
5 UNIDIRECTIONAL PROMOTER 165502 1% 100% 2 Search UNIDIRECTIONAL+PROMOTER Search UNIDIRECTIONAL+PROMOTER
6 OPERONS 165490 2% 25% 8 Search OPERONS Search OPERONS
7 OPERON 123135 4% 9% 16 Search OPERON Search OPERON
8 NEIGHBORING GENES 110333 1% 67% 2 Search NEIGHBORING+GENES Search NEIGHBORING+GENES
9 452 BP PROMOTER 82751 0% 100% 1 Search 452+BP+PROMOTER Search 452+BP+PROMOTER
10 ALG12 82751 0% 100% 1 Search ALG12 Search ALG12

Core articles
The table includes core articles in the class. The following variables is taken into account for the relevance score of an article in a cluster c:
(1) Number of references referring to publications in the class.
(2) Share of total number of active references referring to publications in the class.
(3) Age of the article. New articles get higher score than old articles.
(4) Citation rate, normalized to year.


Rank Reference # ref.
in cl.		 Shr. of ref. in
cl.		 Citations
1 CHUANG, LY , YANG, CH , TSAI, JH , YANG, CH , (2013) OPERON PREDICTION USING CHAOS EMBEDDED PARTICLE SWARM OPTIMIZATION.IEEE-ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS. VOL. 10. ISSUE 5. P. 1299-1309 22 85% 4
2 LEMAY, DG , MARTIN, WF , HINRICHS, AS , RIJNKELS, M , GERMAN, JB , KORF, I , POLLARD, KS , (2012) G-NEST: A GENE NEIGHBORHOOD SCORING TOOL TO IDENTIFY CO-CONSERVED, CO-EXPRESSED GENES.BMC BIOINFORMATICS. VOL. 13. ISSUE . P. - 35 56% 1
3 WEBER, CC , HURST, LD , (2011) SUPPORT FOR MULTIPLE CLASSES OF LOCAL EXPRESSION CLUSTERS IN DROSOPHILA MELANOGASTER, BUT NO EVIDENCE FOR GENE ORDER CONSERVATION.GENOME BIOLOGY. VOL. 12. ISSUE 3. P. - 33 52% 27
4 BROUWER, RWW , KUIPERS, OP , VAN HIJUM, SAFT , (2008) THE RELATIVE VALUE OF OPERON PREDICTIONS.BRIEFINGS IN BIOINFORMATICS. VOL. 9. ISSUE 5. P. 367 -375 29 62% 56
5 WANG, DP , (2016) DLGP: A DATABASE FOR LINEAGE-CONSERVED AND LINEAGE-SPECIFIC GENE PAIRS IN ANIMAL AND PLANT GENOMES.BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS. VOL. 469. ISSUE 3. P. 542 -545 21 78% 0
6 FANG, Y , WANG, L , WANG, XM , YOU, Q , PAN, XC , XIAO, J , WANG, XE , WU, YF , SU, Z , ZHANG, WL , (2016) HISTONE MODIFICATIONS FACILITATE THE COEXPRESSION OF BIDIRECTIONAL PROMOTERS IN RICE.BMC GENOMICS. VOL. 17. ISSUE . P. - 36 42% 0
7 CHUANG, LY , CHANG, HW , TSAI, JH , YANG, CH , (2012) FEATURES FOR COMPUTATIONAL OPERON PREDICTION IN PROKARYOTES.BRIEFINGS IN FUNCTIONAL GENOMICS. VOL. 11. ISSUE 4. P. 291-299 27 53% 7
8 CHUANG, LY , TSAI, JH , YANG, CH , (2010) BINARY PARTICLE SWARM OPTIMIZATION FOR OPERON PREDICTION.NUCLEIC ACIDS RESEARCH. VOL. 38. ISSUE 12. P. - 18 82% 6
9 GHANBARIAN, AT , HURST, LD , (2015) NEIGHBORING GENES SHOW CORRELATED EVOLUTION IN GENE EXPRESSION.MOLECULAR BIOLOGY AND EVOLUTION. VOL. 32. ISSUE 7. P. 1748 -1766 33 34% 9
10 TABOADA, B , VERDE, C , MERINO, E , (2010) HIGH ACCURACY OPERON PREDICTION METHOD BASED ON STRING DATABASE SCORES.NUCLEIC ACIDS RESEARCH. VOL. 38. ISSUE 12. P. - 19 70% 23

Classes with closest relation at Level 1


Rank Class id link
1 20039 ORTHOLOGY//BIDIRECTIONAL BEST HIT//GENOME FUNCTIONAL PREDICTION
2 19074 NATURAL ANTISENSE TRANSCRIPT//WRAP53//OVERLAPPING GENES
3 37162 UNIT HISTOL EMBRYOL PL BIOL//CAENORHABDITIS ELEGANS OLFACTORY NEURONS//CODONOME
4 14677 GENOME REARRANGEMENT//SORTING BY REVERSALS//GENOME REARRANGEMENTS
5 19243 TRANS SPLICING//SPLICED LEADER//CHIMERIC RNA
6 36483 GENOMIC DATA VISUALIZATION//ALTERNATE ASSEMBLIES OF COW GENOMES//BAC FISH MAPPING
7 8300 WHOLE GENOME DUPLICATION//GENOME DUPLICATION//GENE DUPLICATION
8 6844 LATERAL GENE TRANSFER//TREE OF LIFE//HORIZONTAL GENE TRANSFER
9 2111 MOTIF DISCOVERY//TRANSCRIPTION FACTOR BINDING SITE//MOTIF FINDING
10 3065 CHROMOSOME TERRITORY//NUCLEAR ARCHITECTURE//NUCLEAR ORGANIZATION

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