Class information for:
Level 1: ORTHOLOGY//BIDIRECTIONAL BEST HIT//GENOME FUNCTIONAL PREDICTION

Basic class information
Class id #P Avg. number of
references		 Database coverage
of references
20039 479 34.9 81%


Bar chart of Publication_year

Last years might be incomplete

Hierarchy of classes
The table includes all classes above and classes immediately below the current class.


Cluster id Level Cluster label #P
0 4 BIOCHEMISTRY & MOLECULAR BIOLOGY//CELL BIOLOGY//ONCOLOGY 4064930
90 3       MATHEMATICAL & COMPUTATIONAL BIOLOGY//BIOINFORMATICS//BMC BIOINFORMATICS 77178
126 2             MOLECULAR BIOLOGY AND EVOLUTION//BIOINFORMATICS//MATHEMATICAL & COMPUTATIONAL BIOLOGY 23963
20039 1                   ORTHOLOGY//BIDIRECTIONAL BEST HIT//GENOME FUNCTIONAL PREDICTION 479

Terms with highest relevance score


rank Term termType Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 ORTHOLOGY authKW 356100 5% 21% 26
2 BIDIRECTIONAL BEST HIT authKW 143430 1% 75% 3
3 GENOME FUNCTIONAL PREDICTION authKW 127494 0% 100% 2
4 GERMANY MOL MED PARTNERSHIP UNIT address 127494 0% 100% 2
5 GERMANY MOL MED PARTNERSHIP UNIT MMPU address 127494 0% 100% 2
6 INPARALOG authKW 127494 0% 100% 2
7 RECIPROCAL BEST HIT authKW 127494 0% 100% 2
8 UNIREF authKW 127494 0% 100% 2
9 XENOLOG authKW 127494 0% 100% 2
10 BIOINFORMAT GENOM PROGRAMME address 110546 3% 12% 14

Web of Science journal categories


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 Mathematical & Computational Biology 23184 40% 0% 193
2 Biochemical Research Methods 6290 38% 0% 183
3 Biotechnology & Applied Microbiology 5295 44% 0% 213
4 Genetics & Heredity 1446 24% 0% 113
5 Evolutionary Biology 822 9% 0% 43
6 Biochemistry & Molecular Biology 759 35% 0% 168
7 Mycology 6 1% 0% 3
8 Computer Science, Theory & Methods 4 1% 0% 7
9 Computer Science, Interdisciplinary Applications 2 1% 0% 6
10 Computer Science, Software Engineering 1 1% 0% 4

Address terms


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 GERMANY MOL MED PARTNERSHIP UNIT 127494 0% 100% 2
2 GERMANY MOL MED PARTNERSHIP UNIT MMPU 127494 0% 100% 2
3 BIOINFORMAT GENOM PROGRAMME 110546 3% 12% 14
4 BERKELEY PHYLOGENOM GRP 84995 0% 67% 2
5 ANDALUZ BIOL DESARROLLO CABDCSICJA 63747 0% 100% 1
6 ASSAYS BIOINFORMAT 63747 0% 100% 1
7 BGBP UMR 5558 63747 0% 100% 1
8 BINFORMAT 63747 0% 100% 1
9 BIOINFORMAT COMPUTAT GENOMIX BIOBIX 63747 0% 100% 1
10 BIOL STRUCT GENOM INSERM 63747 0% 100% 1

Journals


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 BMC BIOINFORMATICS 32655 13% 1% 62
2 BIOINFORMATICS 30189 15% 1% 71
3 EVOLUTIONARY BIOINFORMATICS 12936 2% 3% 8
4 NUCLEIC ACIDS RESEARCH 12516 18% 0% 88
5 BRIEFINGS IN BIOINFORMATICS 5854 2% 1% 8
6 GENOME BIOLOGY AND EVOLUTION 3813 2% 1% 9
7 BMC GENOMICS 3198 5% 0% 22
8 DATABASE-THE JOURNAL OF BIOLOGICAL DATABASES AND CURATION 2438 1% 1% 5
9 BIOTECHFORUM ( BTF ) 1982 2% 0% 9
10 PLOS COMPUTATIONAL BIOLOGY 1967 3% 0% 12

Author Key Words


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class		 LCSH search Wikipedia search
1 ORTHOLOGY 356100 5% 21% 26 Search ORTHOLOGY Search ORTHOLOGY
2 BIDIRECTIONAL BEST HIT 143430 1% 75% 3 Search BIDIRECTIONAL+BEST+HIT Search BIDIRECTIONAL+BEST+HIT
3 GENOME FUNCTIONAL PREDICTION 127494 0% 100% 2 Search GENOME+FUNCTIONAL+PREDICTION Search GENOME+FUNCTIONAL+PREDICTION
4 INPARALOG 127494 0% 100% 2 Search INPARALOG Search INPARALOG
5 RECIPROCAL BEST HIT 127494 0% 100% 2 Search RECIPROCAL+BEST+HIT Search RECIPROCAL+BEST+HIT
6 UNIREF 127494 0% 100% 2 Search UNIREF Search UNIREF
7 XENOLOG 127494 0% 100% 2 Search XENOLOG Search XENOLOG
8 HOMOLOGY INFERENCE 84995 0% 67% 2 Search HOMOLOGY+INFERENCE Search HOMOLOGY+INFERENCE
9 ORTHOLOG 84195 3% 11% 12 Search ORTHOLOG Search ORTHOLOG
10 ACNUC 63747 0% 100% 1 Search ACNUC Search ACNUC

Core articles
The table includes core articles in the class. The following variables is taken into account for the relevance score of an article in a cluster c:
(1) Number of references referring to publications in the class.
(2) Share of total number of active references referring to publications in the class.
(3) Age of the article. New articles get higher score than old articles.
(4) Citation rate, normalized to year.


Rank Reference # ref.
in cl.		 Shr. of ref. in
cl.		 Citations
1 POWELL, S , SZKLARCZYK, D , TRACHANA, K , ROTH, A , KUHN, M , MULLER, J , ARNOLD, R , RATTEI, T , LETUNIC, I , DOERKS, T , ET AL (2012) EGGNOG V3.0: ORTHOLOGOUS GROUPS COVERING 1133 ORGANISMS AT 41 DIFFERENT TAXONOMIC RANGES.NUCLEIC ACIDS RESEARCH. VOL. 40. ISSUE D1. P. D284 -D289 30 67% 146
2 HUERTA-CEPAS, J , SZKLARCZYK, D , FORSLUND, K , COOK, H , HELLER, D , WALTER, MC , RATTEI, T , MENDE, DR , SUNAGAWA, S , KUHN, M , ET AL (2016) EGGNOG 4.5: A HIERARCHICAL ORTHOLOGY FRAMEWORK WITH IMPROVED FUNCTIONAL ANNOTATIONS FOR EUKARYOTIC, PROKARYOTIC AND VIRAL SEQUENCES.NUCLEIC ACIDS RESEARCH. VOL. 44. ISSUE D1. P. D286 -D293 23 48% 33
3 KRISTENSEN, DM , WOLF, YI , MUSHEGIAN, AR , KOONIN, EV , (2011) COMPUTATIONAL METHODS FOR GENE ORTHOLOGY INFERENCE.BRIEFINGS IN BIOINFORMATICS. VOL. 12. ISSUE 5. P. 379 -391 50 42% 60
4 ALTENHOFF, AM , BOECKMANN, B , CAPELLA-GUTIERREZ, S , DALQUEN, DA , DELUCA, T , FORSLUND, K , HUERTA-CEPAS, J , LINARD, B , PEREIRA, C , PRYSZCZ, LP , ET AL (2016) STANDARDIZED BENCHMARKING IN THE QUEST FOR ORTHOLOGS.NATURE METHODS. VOL. 13. ISSUE 5. P. 425 -+ 33 61% 1
5 ALTENHOFF, AM , SCHNEIDER, A , GONNET, GH , DESSIMOZ, C , (2011) OMA 2011: ORTHOLOGY INFERENCE AMONG 1000 COMPLETE GENOMES.NUCLEIC ACIDS RESEARCH. VOL. 39. ISSUE . P. D289 -D294 20 71% 91
6 ALTENHOFF, AM , GIL, M , GONNET, GH , DESSIMOZ, C , (2013) INFERRING HIERARCHICAL ORTHOLOGOUS GROUPS FROM ORTHOLOGOUS GENE PAIRS.PLOS ONE. VOL. 8. ISSUE 1. P. - 21 72% 24
7 WHITESIDE, MD , WINSOR, GL , LAIRD, MR , BRINKMAN, FSL , (2013) ORTHOLUGEDB: A BACTERIAL AND ARCHAEAL ORTHOLOGY RESOURCE FOR IMPROVED COMPARATIVE GENOMIC ANALYSIS.NUCLEIC ACIDS RESEARCH. VOL. 41. ISSUE D1. P. D366-D376 26 57% 23
8 KUZNIAR, A , VAN HAM, RCHJ , PONGOR, S , LEUNISSEN, JAM , (2008) THE QUEST FOR ORTHOLOGS: FINDING THE CORRESPONDING GENE ACROSS GENOMES.TRENDS IN GENETICS. VOL. 24. ISSUE 11. P. 539 -551 31 44% 120
9 ALTENHOFF, AM , SKUNCA, N , GLOVER, N , TRAIN, CM , SUEKI, A , PILIZOTA, I , GORI, K , TOMICZEK, B , MULLER, S , REDESTIG, H , ET AL (2015) THE OMA ORTHOLOGY DATABASE IN 2015: FUNCTION PREDICTIONS, BETTER PLANT SUPPORT, SYNTENY VIEW AND OTHER IMPROVEMENTS.NUCLEIC ACIDS RESEARCH. VOL. 43. ISSUE D1. P. D240 -D249 21 50% 23
10 POWELL, S , FORSLUND, K , SZKLARCZYK, D , TRACHANA, K , ROTH, A , HUERTA-CEPAS, J , GABALDON, T , RATTEI, T , CREEVEY, C , KUHN, M , ET AL (2014) EGGNOG V4.0: NESTED ORTHOLOGY INFERENCE ACROSS 3686 ORGANISMS.NUCLEIC ACIDS RESEARCH. VOL. 42. ISSUE D1. P. D231 -D239 22 35% 112

Classes with closest relation at Level 1


Rank Class id link
1 24117 EVOLUTIONARY BIOINFORMAT//FOLD SUPERFAMILY//EVOLUTION OF DOMAIN ARCHITECTURE
2 9683 EMBL OUTSTN//LECTURE NOTES IN BIOINFORMATICS//PROT INFORMAT OURCE
3 22783 BIDIRECTIONAL PROMOTER//OPERON PREDICTION//INTERGENIC DISTANCE
4 8300 WHOLE GENOME DUPLICATION//GENOME DUPLICATION//GENE DUPLICATION
5 6844 LATERAL GENE TRANSFER//TREE OF LIFE//HORIZONTAL GENE TRANSFER
6 18864 DATABASE LIFE SCI//DDBJ//EMTRAIN
7 15359 STANDARDS IN GENOMIC SCIENCES//BIOL DATA MANAGEMENT TECHNOL//GEBA
8 36483 GENOMIC DATA VISUALIZATION//ALTERNATE ASSEMBLIES OF COW GENOMES//BAC FISH MAPPING
9 922 SYSTEMATIC BIOLOGY//PHYLOGENETIC NETWORK//PHYLOGENETIC TREE
10 681 PROTEIN INTERACTION NETWORK//PROTEIN PROTEIN INTERACTION NETWORK//ESSENTIAL PROTEINS

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