Class information for:
Level 1: SYSTEMATIC BIOLOGY//PHYLOGENETIC NETWORK//PHYLOGENETIC TREE

Basic class information
Class id #P Avg. number of
references		 Database coverage
of references
922 2957 37.1 65%


Bar chart of Publication_year

Last years might be incomplete

Hierarchy of classes
The table includes all classes above and classes immediately below the current class.


Cluster id Level Cluster label #P
0 4 BIOCHEMISTRY & MOLECULAR BIOLOGY//CELL BIOLOGY//ONCOLOGY 4064930
90 3       MATHEMATICAL & COMPUTATIONAL BIOLOGY//BIOINFORMATICS//BMC BIOINFORMATICS 77178
126 2             MOLECULAR BIOLOGY AND EVOLUTION//BIOINFORMATICS//MATHEMATICAL & COMPUTATIONAL BIOLOGY 23963
922 1                   SYSTEMATIC BIOLOGY//PHYLOGENETIC NETWORK//PHYLOGENETIC TREE 2957

Terms with highest relevance score


rank Term termType Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 SYSTEMATIC BIOLOGY journal 963182 12% 26% 353
2 PHYLOGENETIC NETWORK authKW 775522 4% 66% 114
3 PHYLOGENETIC TREE authKW 303065 7% 14% 206
4 GENE TREE authKW 279796 3% 37% 74
5 SPECIES TREE authKW 271139 3% 31% 85
6 SUPERTREE authKW 270460 2% 46% 57
7 NEIGHBOR JOINING authKW 256072 2% 48% 52
8 EVOLUTIONARY TREE authKW 221878 2% 42% 51
9 PHYLOGENETIC INFERENCE authKW 217001 2% 36% 58
10 PHYLOGENETICS authKW 215716 8% 9% 237

Web of Science journal categories


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with term
in class
1 Evolutionary Biology 135685 45% 1% 1320
2 Mathematical & Computational Biology 38796 21% 1% 625
3 Genetics & Heredity 11803 27% 0% 795
4 Biochemical Research Methods 6254 16% 0% 472
5 Statistics & Probability 2919 8% 0% 240
6 Biotechnology & Applied Microbiology 2289 13% 0% 384
7 Computer Science, Interdisciplinary Applications 2200 8% 0% 234
8 Biology 1934 8% 0% 232
9 Biochemistry & Molecular Biology 1337 21% 0% 630
10 Computer Science, Theory & Methods 1329 6% 0% 191

Address terms


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 ALGORITHMS BIOINFORMAT COMPLEX FORMAL METHODS R 91973 0% 64% 14
2 BIOINFORMAT ZBIT 57801 0% 40% 14
3 BIOMATH 44528 4% 4% 108
4 ALLAN WILSON MOL ECOL EVOLUT 42330 2% 8% 51
5 DKE 38909 0% 54% 7
6 INFORMAT FONDAMENTALE PLICAT 38909 0% 54% 7
7 UNIV VIENNA 33706 0% 23% 14
8 GK STRUKTURBILDUNGSPROZESSE 33037 0% 80% 4
9 ROBERT CEDERGREN 23243 0% 17% 13
10 EXELIXIS 23217 0% 25% 9

Journals


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 SYSTEMATIC BIOLOGY 963182 12% 26% 353
2 MOLECULAR BIOLOGY AND EVOLUTION 125147 9% 5% 260
3 CLADISTICS 123269 3% 13% 92
4 IEEE-ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS 85791 3% 9% 97
5 JOURNAL OF COMPUTATIONAL BIOLOGY 50027 3% 6% 87
6 CLADISTICS-THE INTERNATIONAL JOURNAL OF THE WILLI HENNIG SOCIETY 49520 1% 20% 24
7 ALGORITHMS FOR MOLECULAR BIOLOGY 47219 1% 13% 36
8 MOLECULAR PHYLOGENETICS AND EVOLUTION 45954 5% 3% 154
9 EVOLUTIONARY BIOINFORMATICS 33506 1% 10% 32
10 JOURNAL OF CLASSIFICATION 30726 1% 8% 37

Author Key Words


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class		 LCSH search Wikipedia search
1 PHYLOGENETIC NETWORK 775522 4% 66% 114 Search PHYLOGENETIC+NETWORK Search PHYLOGENETIC+NETWORK
2 PHYLOGENETIC TREE 303065 7% 14% 206 Search PHYLOGENETIC+TREE Search PHYLOGENETIC+TREE
3 GENE TREE 279796 3% 37% 74 Search GENE+TREE Search GENE+TREE
4 SPECIES TREE 271139 3% 31% 85 Search SPECIES+TREE Search SPECIES+TREE
5 SUPERTREE 270460 2% 46% 57 Search SUPERTREE Search SUPERTREE
6 NEIGHBOR JOINING 256072 2% 48% 52 Search NEIGHBOR+JOINING Search NEIGHBOR+JOINING
7 EVOLUTIONARY TREE 221878 2% 42% 51 Search EVOLUTIONARY+TREE Search EVOLUTIONARY+TREE
8 PHYLOGENETIC INFERENCE 217001 2% 36% 58 Search PHYLOGENETIC+INFERENCE Search PHYLOGENETIC+INFERENCE
9 PHYLOGENETICS 215716 8% 9% 237 Search PHYLOGENETICS Search PHYLOGENETICS
10 PHYLOGENETIC INVARIANTS 177482 1% 90% 19 Search PHYLOGENETIC+INVARIANTS Search PHYLOGENETIC+INVARIANTS

Core articles
The table includes core articles in the class. The following variables is taken into account for the relevance score of an article in a cluster c:
(1) Number of references referring to publications in the class.
(2) Share of total number of active references referring to publications in the class.
(3) Age of the article. New articles get higher score than old articles.
(4) Citation rate, normalized to year.


Rank Reference # ref. in
cl.		 Shr. of ref. in
cl.		 Citations
1 MORRISON, DA , (2006) PHYLOGENETIC ANALYSES OF PARASITES IN THE NEW MILLENNIUM.ADVANCES IN PARASITOLOGY, VOL 63. VOL. 63. ISSUE . P. 1 -124 211 63% 7
2 GUINDON, S , GASCUEL, O , (2003) A SIMPLE, FAST, AND ACCURATE ALGORITHM TO ESTIMATE LARGE PHYLOGENIES BY MAXIMUM LIKELIHOOD.SYSTEMATIC BIOLOGY. VOL. 52. ISSUE 5. P. 696-704 27 77% 9889
3 EDWARDS, SV , XI, ZX , JANKE, A , FAIRCLOTH, BC , MCCORMACK, JE , GLENN, TC , ZHONG, BJ , WU, SY , LEMMON, EM , LEMMON, AR , ET AL (2016) IMPLEMENTING AND TESTING THE MULTISPECIES COALESCENT MODEL: A VALUABLE PARADIGM FOR PHYLOGENOMICS.MOLECULAR PHYLOGENETICS AND EVOLUTION. VOL. 94. ISSUE . P. 447 -462 66 68% 12
4 MIRARAB, S , BAYZID, MS , WARNOW, T , (2016) EVALUATING SUMMARY METHODS FOR MULTILOCUS SPECIES TREE ESTIMATION IN THE PRESENCE OF INCOMPLETE LINEAGE SORTING.SYSTEMATIC BIOLOGY. VOL. 65. ISSUE 3. P. 366 -380 44 83% 17
5 LIU, L , XI, ZX , WU, SY , DAVIS, CC , EDWARDS, SV , (2015) ESTIMATING PHYLOGENETIC TREES FROM GENOME-SCALE DATA.YEAR IN EVOLUTIONARY BIOLOGY. VOL. 1360. ISSUE . P. 36 -53 74 77% 16
6 XI, ZX , LIU, L , DAVIS, CC , (2016) THE IMPACT OF MISSING DATA ON SPECIES TREE ESTIMATION.MOLECULAR BIOLOGY AND EVOLUTION. VOL. 33. ISSUE 3. P. 838 -860 60 65% 7
7 SIMMONS, MP , SLOAN, DB , GATESY, J , (2016) THE EFFECTS OF SUBSAMPLING GENE TREES ON COALESCENT METHODS APPLIED TO ANCIENT DIVERGENCES.MOLECULAR PHYLOGENETICS AND EVOLUTION. VOL. 97. ISSUE . P. 76 -89 68 69% 3
8 LIU, L , YU, LL , KUBATKO, L , PEARL, DK , EDWARDS, SV , (2009) COALESCENT METHODS FOR ESTIMATING PHYLOGENETIC TREES.MOLECULAR PHYLOGENETICS AND EVOLUTION. VOL. 53. ISSUE 1. P. 320 -328 58 85% 146
9 GUINDON, S , DUFAYARD, JF , LEFORT, V , ANISIMOVA, M , HORDIJK, W , GASCUEL, O , (2010) NEW ALGORITHMS AND METHODS TO ESTIMATE MAXIMUM-LIKELIHOOD PHYLOGENIES: ASSESSING THE PERFORMANCE OF PHYML 3.0.SYSTEMATIC BIOLOGY. VOL. 59. ISSUE 3. P. 307 -321 19 66% 3880
10 GATESY, J , SPRINGER, MS , (2014) PHYLOGENETIC ANALYSIS AT DEEP TIMESCALES: UNRELIABLE GENE TREES, BYPASSED HIDDEN SUPPORT, AND THE COALESCENCE/CONCATALESCENCE CONUNDRUM.MOLECULAR PHYLOGENETICS AND EVOLUTION. VOL. 80. ISSUE . P. 231 -266 76 55% 44

Classes with closest relation at Level 1


Rank Class id link
1 24819 TIGHT SPAN//INJECTIVE HULL//Q HYPERCONVEX
2 10256 CODON MODELS//POSITIVE SELECTION//MOLECULAR BIOLOGY AND EVOLUTION
3 20039 ORTHOLOGY//BIDIRECTIONAL BEST HIT//GENOME FUNCTIONAL PREDICTION
4 6844 LATERAL GENE TRANSFER//TREE OF LIFE//HORIZONTAL GENE TRANSFER
5 31531 UNIDAD GENET BIOL EVOLUT//CLADISTIC MAXIMUM PARSIMONY//HETEROGENEITY OF TRANSFORMATION RATES
6 5613 MACROEVOLUTION//COMPARATIVE METHOD//DIVERSIFICATION RATES
7 23176 COMPARATIVE DETERMINANT ANALYSIS//ABT IMMUNOGENET//AND MACROEVOLUTION
8 20234 RECOMBINATION DETECTION//SPECIES CONCEPT//PERIODIC SELECTION
9 33727 GYMNOSPORIA//CASSINOIDEAE//CELASTROIDEAE
10 31426 CATEDRA BIOL COMPORTAMIENTO//BASILISCUS VITTATUS//BHA BIOL INTEGRAL IMPACT AMBIENTAL

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