Class information for:
Level 1: R391//R997//GENOMIC ISLAND

Basic class information
Class id #P Avg. number of
references		 Database coverage
of references
25327 285 46.0 88%


Bar chart of Publication_year

Last years might be incomplete

Hierarchy of classes
The table includes all classes above and classes immediately below the current class.


Cluster id Level Cluster label #P
0 4 BIOCHEMISTRY & MOLECULAR BIOLOGY//CELL BIOLOGY//ONCOLOGY 4064930
90 3       MATHEMATICAL & COMPUTATIONAL BIOLOGY//BIOINFORMATICS//BMC BIOINFORMATICS 77178
126 2             MOLECULAR BIOLOGY AND EVOLUTION//BIOINFORMATICS//MATHEMATICAL & COMPUTATIONAL BIOLOGY 23963
25327 1                   R391//R997//GENOMIC ISLAND 285

Terms with highest relevance score


rank Term termType Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 R391 authKW 964271 3% 100% 9
2 R997 authKW 535706 2% 100% 5
3 GENOMIC ISLAND authKW 464235 9% 17% 26
4 INTEGRATIVE AND CONJUGATIVE ELEMENT authKW 418182 4% 35% 11
5 SXT authKW 403834 2% 54% 7
6 BACTERIAL MOL GENET address 385704 2% 60% 6
7 PMERPH authKW 342850 1% 80% 4
8 INCJ authKW 321424 1% 100% 3
9 R392 authKW 321424 1% 100% 3
10 R705 authKW 321424 1% 100% 3

Web of Science journal categories


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 Microbiology 6293 61% 0% 175
2 Genetics & Heredity 472 18% 0% 51
3 Biotechnology & Applied Microbiology 434 18% 0% 50
4 Mathematical & Computational Biology 428 7% 0% 21
5 Biochemistry & Molecular Biology 231 27% 0% 76
6 Biochemical Research Methods 108 7% 0% 21
7 Infectious Diseases 24 4% 0% 10
8 Evolutionary Biology 1 1% 0% 2
9 Cell Biology 0 3% 0% 8
10 Statistics & Probability 0 1% 0% 2

Address terms


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 BACTERIAL MOL GENET 385704 2% 60% 6
2 MOL BIOCHEM GRP 214282 1% 100% 2
3 MICROBIAL SYST SYNTHET BIOL 142854 1% 67% 2
4 UMR1128 137750 1% 43% 3
5 AREA BASIC SALUT 107141 0% 100% 1
6 CHINA CDC STATE INFECT DIS PREVENT CONT 107141 0% 100% 1
7 DIPATIMENTO BIOL CELLULARE SVILUPPO 107141 0% 100% 1
8 E SECUR RD 107141 0% 100% 1
9 ENERGY ENVIRONM BIOL 107141 0% 100% 1
10 ETUDE VALORISAT ERSITE MICROBIENNE CEVDM 107141 0% 100% 1

Journals


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 JOURNAL OF BACTERIOLOGY 3718 12% 0% 34
2 BMC MICROBIOLOGY 3487 4% 0% 10
3 PLASMID 3375 3% 0% 8
4 MOLECULAR MICROBIOLOGY 2293 6% 0% 16
5 PLOS GENETICS 1766 4% 0% 10
6 MOLECULAR GENETICS MICROBIOLOGY AND VIROLOGY 1619 1% 1% 2
7 FEMS MICROBIOLOGY LETTERS 1504 5% 0% 15
8 NUCLEIC ACIDS RESEARCH 1411 8% 0% 23
9 JOURNAL OF MOLECULAR MICROBIOLOGY AND BIOTECHNOLOGY 1195 1% 0% 3
10 BIOINFORMATICS 991 4% 0% 10

Author Key Words


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class		 LCSH search Wikipedia search
1 R391 964271 3% 100% 9 Search R391 Search R391
2 R997 535706 2% 100% 5 Search R997 Search R997
3 GENOMIC ISLAND 464235 9% 17% 26 Search GENOMIC+ISLAND Search GENOMIC+ISLAND
4 INTEGRATIVE AND CONJUGATIVE ELEMENT 418182 4% 35% 11 Search INTEGRATIVE+AND+CONJUGATIVE+ELEMENT Search INTEGRATIVE+AND+CONJUGATIVE+ELEMENT
5 SXT 403834 2% 54% 7 Search SXT Search SXT
6 PMERPH 342850 1% 80% 4 Search PMERPH Search PMERPH
7 INCJ 321424 1% 100% 3 Search INCJ Search INCJ
8 R392 321424 1% 100% 3 Search R392 Search R392
9 R705 321424 1% 100% 3 Search R705 Search R705
10 GENOMIC BARCODE 214282 1% 100% 2 Search GENOMIC+BARCODE Search GENOMIC+BARCODE

Core articles
The table includes core articles in the class. The following variables is taken into account for the relevance score of an article in a cluster c:
(1) Number of references referring to publications in the class.
(2) Share of total number of active references referring to publications in the class.
(3) Age of the article. New articles get higher score than old articles.
(4) Citation rate, normalized to year.


Rank Reference # ref.
in cl.		 Shr. of ref. in
cl.		 Citations
1 RYAN, MP , ARMSHAW, P , PEMBROKE, JT , (2016) SXT/R391 INTEGRATIVE AND CONJUGATIVE ELEMENTS (ICES) ENCODE A NOVEL 'TRAP-DOOR' STRATEGY FOR MOBILE ELEMENT ESCAPE.FRONTIERS IN MICROBIOLOGY. VOL. 7. ISSUE . P. - 30 83% 0
2 BADHAI, J , DAS, SK , (2016) CHARACTERIZATION OF THREE NOVEL SXT/R391 INTEGRATING CONJUGATIVE ELEMENTS ICEMFULND1A AND ICEMFULND1B, AND ICEMPRCHN1 IDENTIFIED IN THE GENOMES OF MARINOMONAS FUNGIAE JCM 18476(T) AND MARINOMONAS PROFUNDIMARIS STRAIN D104.FRONTIERS IN MICROBIOLOGY. VOL. 7. ISSUE . P. - 31 76% 0
3 LEI, CW , ZHANG, AY , WANG, HN , LIU, BH , YANG, LQ , YANG, YQ , (2016) CHARACTERIZATION OF SXT/R391 INTEGRATIVE AND CONJUGATIVE ELEMENTS IN PROTEUS MIRABILIS ISOLATES FROM FOOD-PRODUCING ANIMALS IN CHINA.ANTIMICROBIAL AGENTS AND CHEMOTHERAPY. VOL. 60. ISSUE 3. P. 1935 -1938 19 76% 3
4 DELAVAT, F , MITRI, S , PELET, S , VAN DER MEER, JR , (2016) HIGHLY VARIABLE INDIVIDUAL DONOR CELL FATES CHARACTERIZE ROBUST HORIZONTAL GENE TRANSFER OF AN INTEGRATIVE AND CONJUGATIVE ELEMENT.PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. VOL. 113. ISSUE 24. P. E3375 -E3383 26 58% 2
5 DHILLON, BK , LAIRD, MR , SHAY, JA , WINSOR, GL , LO, R , NIZAM, F , PEREIRA, SK , WAGLECHNER, N , MCARTHUR, AG , LANGILLE, MGI , ET AL (2015) ISLANDVIEWER 3: MORE FLEXIBLE, INTERACTIVE GENOMIC ISLAND DISCOVERY, VISUALIZATION AND ANALYSIS.NUCLEIC ACIDS RESEARCH. VOL. 43. ISSUE W1. P. W104 -W108 14 70% 55
6 JOHNSON, CM , GROSSMAN, AD , (2015) INTEGRATIVE AND CONJUGATIVE ELEMENTS (ICES): WHAT THEY DO AND HOW THEY WORK.ANNUAL REVIEW OF GENETICS, VOL 49. VOL. 49. ISSUE . P. 577 -601 47 32% 6
7 POULIN-LAPRADE, D , CARRARO, N , BURRUS, V , (2015) THE EXTENDED REGULATORY NETWORKS OF SXT/R391 INTEGRATIVE AND CONJUGATIVE ELEMENTS AND INCA/C CONJUGATIVE PLASMIDS.FRONTIERS IN MICROBIOLOGY. VOL. 6. ISSUE . P. - 46 34% 3
8 BELLANGER, X , PAYOT, S , LEBLOND-BOURGET, N , GUEDON, G , (2014) CONJUGATIVE AND MOBILIZABLE GENOMIC ISLANDS IN BACTERIA: EVOLUTION AND DIVERSITY.FEMS MICROBIOLOGY REVIEWS. VOL. 38. ISSUE 4. P. 720 -760 59 21% 37
9 LANGILLE, MGI , BRINKMAN, FSL , (2009) ISLANDVIEWER: AN INTEGRATED INTERFACE FOR COMPUTATIONAL IDENTIFICATION AND VISUALIZATION OF GENOMIC ISLANDS.BIOINFORMATICS. VOL. 25. ISSUE 5. P. 664-665 13 93% 199
10 CARRARO, N , POULIN, D , BURRUS, V , (2015) REPLICATION AND ACTIVE PARTITION OF INTEGRATIVE AND CONJUGATIVE ELEMENTS (ICES) OF THE SXT/R391 FAMILY: THE LINE BETWEEN ICES AND CONJUGATIVE PLASMIDS IS GETTING THINNER.PLOS GENETICS. VOL. 11. ISSUE 6. P. - 34 38% 10

Classes with closest relation at Level 1


Rank Class id link
1 18319 TN916//CONJUGATIVE TRANSPOSON//NWFIII MIKROBIOL
2 9253 BACTERIAL CONJUGATION//RELAXASE//COUPLING PROTEIN
3 6844 LATERAL GENE TRANSFER//TREE OF LIFE//HORIZONTAL GENE TRANSFER
4 36483 GENOMIC DATA VISUALIZATION//ALTERNATE ASSEMBLIES OF COW GENOMES//BAC FISH MAPPING
5 10725 PSEUDOMONAS AERUGINOSA//OE 6710//LIVERPOOL EPIDEMIC STRAIN
6 317 VIBRIO CHOLERAE//CHOLERA//VIBRIO CHOLERAE O1
7 5567 EXPEC//AVIAN PATHOGENIC ESCHERICHIA COLI//AVIAN COLIBACILLOSIS
8 18221 SKIRBALL PROGRAM MOL PATHOGENESIS//RETRON//MSDNA
9 15359 STANDARDS IN GENOMIC SCIENCES//BIOL DATA MANAGEMENT TECHNOL//GEBA
10 20234 RECOMBINATION DETECTION//SPECIES CONCEPT//PERIODIC SELECTION

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