Class information for:
Level 1: PUPYLATION//PROKARYOTIC UBIQUITIN LIKE PROTEIN//PAFA

Basic class information
Class id #P Avg. number of
references		 Database coverage
of references
31973 145 43.8 93%


Bar chart of Publication_year

Last years might be incomplete

Hierarchy of classes
The table includes all classes above and classes immediately below the current class.


Cluster id Level Cluster label #P
0 4 BIOCHEMISTRY & MOLECULAR BIOLOGY//CELL BIOLOGY//ONCOLOGY 4064930
204 3       PROTEASOME//UBIQUITIN//UNFOLDED PROTEIN RESPONSE 52492
677 2             PROTEASOME//UBIQUITIN//PROTEASOME INHIBITOR 13186
31973 1                   PUPYLATION//PROKARYOTIC UBIQUITIN LIKE PROTEIN//PAFA 145

Terms with highest relevance score


rank Term termType Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 PUPYLATION authKW 2961419 10% 94% 15
2 PROKARYOTIC UBIQUITIN LIKE PROTEIN authKW 1083032 4% 86% 6
3 PAFA authKW 842360 3% 100% 4
4 PUP authKW 647065 9% 24% 13
5 PROKARYOTIC UBIQUITIN LIKE PROTEIN PUP authKW 631770 2% 100% 3
6 TRNA THIOLATION authKW 631770 2% 100% 3
7 URM1 authKW 584968 3% 56% 5
8 BETA GRASP FOLD authKW 315882 2% 50% 3
9 UBIQUITIN RELATED MODIFIER authKW 280785 1% 67% 2
10 ADV ANALYT HLTH TECHNOL address 210590 1% 100% 1

Web of Science journal categories


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 Biochemistry & Molecular Biology 1129 71% 0% 103
2 Microbiology 350 21% 0% 31
3 Biophysics 253 16% 0% 23
4 Cell Biology 137 17% 0% 25
5 Biochemical Research Methods 47 7% 0% 10
6 Biology 8 3% 0% 4
7 Biotechnology & Applied Microbiology 5 4% 0% 6
8 Mathematical & Computational Biology 5 1% 0% 2
9 Integrative & Complementary Medicine 3 1% 0% 1
10 Mycology 2 1% 0% 1

Address terms


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 ADV ANALYT HLTH TECHNOL 210590 1% 100% 1
2 CHEM PHYSICOCHEM BIOL 210590 1% 100% 1
3 HEFEI PHYS SCI MICROSCALC 210590 1% 100% 1
4 MED TUBERCULOSIS 210590 1% 100% 1
5 OMICS SCI OSC 210590 1% 100% 1
6 SYNTHET BIOL IL 210590 1% 100% 1
7 JANET DAVID POLAK TUMOR VASC BIOL 105294 1% 50% 1
8 TECHNION INTEGRATED CANC 52646 1% 25% 1
9 MOL BIOL BIOPHYS 40638 10% 1% 14
10 FG MIKROBIOL 35097 1% 17% 1

Journals


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 BIOLOGY DIRECT 1517 1% 0% 2
2 ARCHAEA-AN INTERNATIONAL MICROBIOLOGICAL JOURNAL 1421 1% 1% 1
3 MOLECULAR BIOSYSTEMS 1241 3% 0% 4
4 TRENDS IN MICROBIOLOGY 1052 2% 0% 3
5 ANNUAL REVIEW OF MICROBIOLOGY 884 1% 0% 2
6 EMBO REPORTS 872 2% 0% 3
7 MOLECULAR MICROBIOLOGY 631 4% 0% 6
8 INTERNATIONAL MICROBIOLOGY 548 1% 0% 1
9 PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS 522 3% 0% 4
10 BMC STRUCTURAL BIOLOGY 418 1% 0% 1

Author Key Words


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class		 LCSH search Wikipedia search
1 PUPYLATION 2961419 10% 94% 15 Search PUPYLATION Search PUPYLATION
2 PROKARYOTIC UBIQUITIN LIKE PROTEIN 1083032 4% 86% 6 Search PROKARYOTIC+UBIQUITIN+LIKE+PROTEIN Search PROKARYOTIC+UBIQUITIN+LIKE+PROTEIN
3 PAFA 842360 3% 100% 4 Search PAFA Search PAFA
4 PUP 647065 9% 24% 13 Search PUP Search PUP
5 PROKARYOTIC UBIQUITIN LIKE PROTEIN PUP 631770 2% 100% 3 Search PROKARYOTIC+UBIQUITIN+LIKE+PROTEIN+PUP Search PROKARYOTIC+UBIQUITIN+LIKE+PROTEIN+PUP
6 TRNA THIOLATION 631770 2% 100% 3 Search TRNA+THIOLATION Search TRNA+THIOLATION
7 URM1 584968 3% 56% 5 Search URM1 Search URM1
8 BETA GRASP FOLD 315882 2% 50% 3 Search BETA+GRASP+FOLD Search BETA+GRASP+FOLD
9 UBIQUITIN RELATED MODIFIER 280785 1% 67% 2 Search UBIQUITIN+RELATED+MODIFIER Search UBIQUITIN+RELATED+MODIFIER
10 ANBU 210590 1% 100% 1 Search ANBU Search ANBU

Core articles
The table includes core articles in the class. The following variables is taken into account for the relevance score of an article in a cluster c:
(1) Number of references referring to publications in the class.
(2) Share of total number of active references referring to publications in the class.
(3) Age of the article. New articles get higher score than old articles.
(4) Citation rate, normalized to year.


Rank Reference # ref.
in cl.		 Shr. of ref. in
cl.		 Citations
1 MAUPIN-FURLOW, JA , (2014) PROKARYOTIC UBIQUITIN-LIKE PROTEIN MODIFICATION.ANNUAL REVIEW OF MICROBIOLOGY, VOL 68. VOL. 68. ISSUE . P. 155 -175 61 49% 7
2 ELHARAR, Y , ROTH, Z , HECHT, N , ROTKOPF, R , KHALAILA, I , GUR, E , (2016) POSTTRANSLATIONAL REGULATION OF COORDINATED ENZYME ACTIVITIES IN THE PUP-PROTEASOME SYSTEM.PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. VOL. 113. ISSUE 12. P. E1605 -E1614 26 81% 2
3 CHEN, XJ , LI, CD , WANG, L , LIU, Y , LI, CY , ZHANG, JJ , (2016) THE MECHANISM OF MYCOBACTERIUM SMEGMATIS PAFA SELF-PUPYLATION.PLOS ONE. VOL. 11. ISSUE 3. P. - 27 77% 1
4 BARANDUN, J , DELLEY, CL , BAN, N , WEBER-BAN, E , (2013) CRYSTAL STRUCTURE OF THE COMPLEX BETWEEN PROKARYOTIC UBIQUITIN-LIKE PROTEIN AND ITS LIGASE PAFA.JOURNAL OF THE AMERICAN CHEMICAL SOCIETY. VOL. 135. ISSUE 18. P. 6794-6797 20 91% 7
5 ELHARAR, Y , ROTH, Z , HERMELIN, I , MOON, A , PERETZ, G , SHENKERMAN, Y , VISHKAUTZAN, M , KHALAILA, I , GUR, E , (2014) SURVIVAL OF MYCOBACTERIA DEPENDS ON PROTEASOME-MEDIATED AMINO ACID RECYCLING UNDER NUTRIENT LIMITATION.EMBO JOURNAL. VOL. 33. ISSUE 16. P. 1802 -1814 28 56% 14
6 FORER, N , KORMAN, M , ELHARAR, Y , VISHKAUTZAN, M , GUR, E , (2013) BACTERIAL PROTEASOME AND PAFA, THE PUP LIGASE, INTERACT TO FORM A MODULAR PROTEIN TAGGING AND DEGRADATION MACHINE.BIOCHEMISTRY. VOL. 52. ISSUE 50. P. 9029-9035 23 77% 2
7 REGEV, O , KORMAN, M , HECHT, N , ROTH, Z , FORER, N , ZARIVACH, R , GUR, E , (2016) AN EXTENDED LOOP OF THE PUP LIGASE, PAFA, MEDIATES INTERACTION WITH PROTEIN TARGETS.JOURNAL OF MOLECULAR BIOLOGY. VOL. 428. ISSUE 20. P. 4143 -4153 22 76% 0
8 JASTRAB, JB , DARWIN, KH , (2015) BACTERIAL PROTEASOMES.ANNUAL REVIEW OF MICROBIOLOGY, VOL 69. VOL. 69. ISSUE . P. 109 -127 37 43% 4
9 BOUBAKRI, H , SEGHEZZI, N , DUCHATEAU, M , GOMINET, M , KOFRONOVA, O , BENADA, O , MAZODIER, P , PERNODET, JL , (2015) THE ABSENCE OF PUPYLATION (PROKARYOTIC UBIQUITIN-LIKE PROTEIN MODIFICATION) AFFECTS MORPHOLOGICAL AND PHYSIOLOGICAL DIFFERENTIATION IN STREPTOMYCES COELICOLOR.JOURNAL OF BACTERIOLOGY. VOL. 197. ISSUE 21. P. 3388 -3399 29 55% 2
10 BARANDUN, J , DELLEY, CL , WEBER-BAN, E , (2012) THE PUPYLATION PATHWAY AND ITS ROLE IN MYCOBACTERIA.BMC BIOLOGY. VOL. 10. ISSUE . P. - 31 53% 15

Classes with closest relation at Level 1


Rank Class id link
1 1429 PROTEASOME//MULTICATALYTIC PROTEINASE//IMMUNOPROTEASOME
2 20432 KINASE SPECIFIC//PTM CODE//CELLULAR MOL LOG TEAM
3 3837 DEUBIQUITINATING ENZYME//UBIQUITIN//DEUBIQUITINASE
4 35756 UFM1//UBA5//UBE1DC1
5 19805 PERCHLORIC ACID SOLUBLE PROTEIN//THIAMINE BINDING PROTEIN//THIAMINE BIOSYNTHESIS
6 3592 TRNA MODIFICATION//QUEUINE//RNA MODIFICATION
7 2106 MYCOBACTERIUM TUBERCULOSIS//PE_PGRS//TUBERCULOSIS
8 3923 SUMO//SUMOYLATION//UBC9
9 5584 ATP DEPENDENT PROTEASE//CLPB//FTSH
10 13789 FAMILIAL DYSAUTONOMIA//HEREDITARY SENSORY AND AUTONOMIC NEUROPATHY//RILEY DAY SYNDROME

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