Class information for:
Level 1: TRANSMEMBRANE HELIX//TRANSMEMBRANE HELICES//MEMBRANE PROTEIN

Basic class information
Class id #P Avg. number of
references		 Database coverage
of references
4131 1842 50.0 87%


Bar chart of Publication_year

Last years might be incomplete

Hierarchy of classes
The table includes all classes above and classes immediately below the current class.


Cluster id Level Cluster label #P
0 4 BIOCHEMISTRY & MOLECULAR BIOLOGY//CELL BIOLOGY//ONCOLOGY 4064930
219 3       PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS//PROTEIN FOLDING//PROTEIN STRUCTURE PREDICTION 50409
365 2             PROTEIN STRUCTURE PREDICTION//PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS//PSEUDO AMINO ACID COMPOSITION 17331
4131 1                   TRANSMEMBRANE HELIX//TRANSMEMBRANE HELICES//MEMBRANE PROTEIN 1842

Terms with highest relevance score


rank Term termType Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 TRANSMEMBRANE HELIX authKW 439352 3% 43% 62
2 TRANSMEMBRANE HELICES authKW 319097 2% 51% 38
3 MEMBRANE PROTEIN authKW 279449 15% 6% 284
4 HELIX HELIX INTERACTION authKW 215803 1% 52% 25
5 MEMBRANE PROTEIN FOLDING authKW 197324 2% 37% 32
6 TOPOLOGY PREDICTION authKW 191602 1% 68% 17
7 HYDROPHOBIC MISMATCH authKW 133358 1% 31% 26
8 TRANSMEMBRANE SEGMENT authKW 120084 1% 32% 23
9 TRANSMEMBRANE HELIX PREDICTION authKW 117869 0% 89% 8
10 TOXCAT authKW 116708 1% 54% 13

Web of Science journal categories


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with term
in class
1 Biophysics 12427 30% 0% 553
2 Biochemistry & Molecular Biology 12360 66% 0% 1222
3 Mathematical & Computational Biology 2907 8% 0% 139
4 Biochemical Research Methods 1557 10% 0% 193
5 Biotechnology & Applied Microbiology 378 7% 0% 138
6 Cell Biology 343 9% 0% 165
7 Computer Science, Interdisciplinary Applications 253 4% 0% 70
8 Biology 40 2% 0% 38
9 Chemistry, Physical 9 5% 0% 94
10 Chemistry, Multidisciplinary 8 5% 0% 88

Address terms


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 STOCKHOLM BIOINFORMAT 93413 2% 17% 34
2 MOL STRUCT FUNCT 87955 2% 17% 31
3 SCI BIO OURCES PROGRAM 82878 0% 100% 5
4 BIOMEMBRANE 53903 3% 6% 52
5 LEHRSTUHL CHEM BIOPOLYMERE 51722 1% 20% 16
6 ELECT INFORMAT SYST ENGN 41767 1% 23% 11
7 BIOCHEM MEMBRANES 37600 1% 12% 19
8 PROGRAM MACROMOL STRUCT 36837 1% 17% 13
9 GENOM PROTEMOL BIOL 33151 0% 100% 2
10 SWEDEN BIOINFORMAT INFRASTRUCT LIFE SCI BILS 33151 0% 100% 2

Journals


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 BIOPHYSICAL JOURNAL 16321 8% 1% 139
2 BIOCHIMICA ET BIOPHYSICA ACTA-BIOMEMBRANES 15671 4% 1% 77
3 PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS 14911 4% 1% 76
4 JOURNAL OF MOLECULAR BIOLOGY 13622 8% 1% 139
5 PROTEIN SCIENCE 11080 4% 1% 65
6 BIOCHEMISTRY 10957 10% 0% 189
7 BIOINFORMATICS 6684 4% 1% 66
8 CURRENT OPINION IN STRUCTURAL BIOLOGY 6507 2% 1% 30
9 BIOPOLYMERS 4876 2% 1% 44
10 COMPUTATIONAL BIOLOGY AND CHEMISTRY 4233 1% 2% 15

Author Key Words


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class		 LCSH search Wikipedia search
1 TRANSMEMBRANE HELIX 439352 3% 43% 62 Search TRANSMEMBRANE+HELIX Search TRANSMEMBRANE+HELIX
2 TRANSMEMBRANE HELICES 319097 2% 51% 38 Search TRANSMEMBRANE+HELICES Search TRANSMEMBRANE+HELICES
3 MEMBRANE PROTEIN 279449 15% 6% 284 Search MEMBRANE+PROTEIN Search MEMBRANE+PROTEIN
4 HELIX HELIX INTERACTION 215803 1% 52% 25 Search HELIX+HELIX+INTERACTION Search HELIX+HELIX+INTERACTION
5 MEMBRANE PROTEIN FOLDING 197324 2% 37% 32 Search MEMBRANE+PROTEIN+FOLDING Search MEMBRANE+PROTEIN+FOLDING
6 TOPOLOGY PREDICTION 191602 1% 68% 17 Search TOPOLOGY+PREDICTION Search TOPOLOGY+PREDICTION
7 HYDROPHOBIC MISMATCH 133358 1% 31% 26 Search HYDROPHOBIC+MISMATCH Search HYDROPHOBIC+MISMATCH
8 TRANSMEMBRANE SEGMENT 120084 1% 32% 23 Search TRANSMEMBRANE+SEGMENT Search TRANSMEMBRANE+SEGMENT
9 TRANSMEMBRANE HELIX PREDICTION 117869 0% 89% 8 Search TRANSMEMBRANE+HELIX+PREDICTION Search TRANSMEMBRANE+HELIX+PREDICTION
10 TOXCAT 116708 1% 54% 13 Search TOXCAT Search TOXCAT

Core articles
The table includes core articles in the class. The following variables is taken into account for the relevance score of an article in a cluster c:
(1) Number of references referring to publications in the class.
(2) Share of total number of active references referring to publications in the class.
(3) Age of the article. New articles get higher score than old articles.
(4) Citation rate, normalized to year.


Rank Reference # ref. in
cl.		 Shr. of ref. in
cl.		 Citations
1 LI, E , WIMLEY, WC , HRISTOVA, K , (2012) TRANSMEMBRANE HELIX DIMERIZATION: BEYOND THE SEARCH FOR SEQUENCE MOTIFS.BIOCHIMICA ET BIOPHYSICA ACTA-BIOMEMBRANES. VOL. 1818. ISSUE 2. P. 183-193 100 82% 54
2 MACKENZIE, KR , (2006) FOLDING AND STABILITY OF ALPHA-HELICAL INTEGRAL MEMBRANE PROTEINS.CHEMICAL REVIEWS. VOL. 106. ISSUE 5. P. 1931 -1977 242 38% 133
3 STEINDORF, D , SCHNEIDER, D , (2017) IN VIVO SELECTION OF HETEROTYPICALLY INTERACTING TRANSMEMBRANE HELICES: COMPLEMENTARY HELIX SURFACES, RATHER THAN CONSERVED INTERACTION MOTIFS, DRIVE FORMATION OF TRANSMEMBRANE HETERO-DIMERS.BIOCHIMICA ET BIOPHYSICA ACTA-BIOMEMBRANES. VOL. 1859. ISSUE 2. P. 245 -256 83 93% 0
4 BORDAG, N , KELLER, S , (2010) ALPHA-HELICAL TRANSMEMBRANE PEPTIDES: A "DIVIDE AND CONQUER" APPROACH TO MEMBRANE PROTEINS.CHEMISTRY AND PHYSICS OF LIPIDS. VOL. 163. ISSUE 1. P. 1-26 165 39% 44
5 LIANG, J , NAVEED, H , JIMENEZ-MORALES, D , ADAMIAN, L , LIN, MS , (2012) COMPUTATIONAL STUDIES OF MEMBRANE PROTEINS: MODELS AND PREDICTIONS FOR BIOLOGICAL UNDERSTANDING.BIOCHIMICA ET BIOPHYSICA ACTA-BIOMEMBRANES. VOL. 1818. ISSUE 4. P. 927 -941 105 59% 12
6 TUSNADY, GE , SIMON, I , (2010) TOPOLOGY PREDICTION OF HELICAL TRANSMEMBRANE PROTEINS: HOW FAR HAVE WE REACHED?.CURRENT PROTEIN & PEPTIDE SCIENCE. VOL. 11. ISSUE 7. P. 550 -561 83 72% 14
7 RATH, A , DEBER, CM , (2012) PROTEIN STRUCTURE IN MEMBRANE DOMAINS.ANNUAL REVIEW OF BIOPHYSICS, VOL 41. VOL. 41. ISSUE . P. 135-155 68 82% 11
8 SENES, A , ENGEL, DE , DEGRADO, WF , (2004) FOLDING OF HELICAL MEMBRANE PROTEINS: THE ROLE OF POLAR, GXXXG-LIKE AND PROLINE MOTIFS.CURRENT OPINION IN STRUCTURAL BIOLOGY. VOL. 14. ISSUE 4. P. 465 -479 83 62% 271
9 LANGOSCH, D , ARKIN, IT , (2009) INTERACTION AND CONFORMATIONAL DYNAMICS OF MEMBRANE-SPANNING PROTEIN HELICES.PROTEIN SCIENCE. VOL. 18. ISSUE 7. P. 1343-1358 105 50% 61
10 CYMER, F , VEERAPPAN, A , SCHNEIDER, D , (2012) TRANSMEMBRANE HELIX-HELIX INTERACTIONS ARE MODULATED BY THE SEQUENCE CONTEXT AND BY LIPID BILAYER PROPERTIES.BIOCHIMICA ET BIOPHYSICA ACTA-BIOMEMBRANES. VOL. 1818. ISSUE 4. P. 963 -973 65 72% 37

Classes with closest relation at Level 1


Rank Class id link
1 15795 AMPHIPOLS//UMR 7099//MEMBRANE PROTEIN
2 19931 M2 CHANNEL//M2 PROTON CHANNEL//M2 ION CHANNEL
3 2729 MEMPHYS BIOMEMBRANE PHYS//LIPID BILAYER//BIOPHYS STAT MECH GRP
4 12405 PROTEIN SECONDARY STRUCTURE PREDICTION//SECONDARY STRUCTURE PREDICTION//SOLVENT ACCESSIBILITY
5 23632 BICELLE//BICELLAR SYSTEMS//DIHEXANOYL GLYCERO PHOSPHATIDYLCHOLINE
6 5827 PORIN//MALTOPORIN//OUTER MEMBRANE PROTEIN
7 10521 LACTOSE PERMEASE//PHYSIOL MICROBIOL//MACDONALD S 5 748
8 4955 SIGNAL RECOGNITION PARTICLE//TRANSLOCON//FFH
9 9181 GRAMICIDIN A//GRAMICIDIN//SENSITIZED PHOTOINACTIVATION
10 4196 G PROTEIN COUPLED RECEPTOR//GPCR//MEMBRANE PROT STRUCT FUNCT UNIT

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