Class information for:
Level 1: PHOTOACTIVE YELLOW PROTEIN//PHOTOACTIVE YELLOW PROTEIN PYP//XANTHOPSINS

Basic class information

Bar chart of Publication_year

Last years might be incomplete

Hierarchy of classes

The table includes all classes above and classes immediately below the current class.



Cluster id Level Cluster label #P
9 4 PLANT SCIENCES//FOOD SCIENCE & TECHNOLOGY//AGRONOMY 1475572
41 3       PLANT SCIENCES//ARABIDOPSIS//PLANT CELL 105955
1982 2             PHYTOCHROME//PHOTOMORPHOGENESIS//PHOTOTROPIN 5973
20955 1                   PHOTOACTIVE YELLOW PROTEIN//PHOTOACTIVE YELLOW PROTEIN PYP//XANTHOPSINS 462

Terms with highest relevance score



rank Category termType chi_square shrOfCwithTerm shrOfTermInClass termInClass
1 PHOTOACTIVE YELLOW PROTEIN authKW 2423487 10% 79% 45
2 PHOTOACTIVE YELLOW PROTEIN PYP authKW 371402 2% 78% 7
3 XANTHOPSINS authKW 272869 1% 100% 4
4 PYP authKW 272865 1% 67% 6
5 ECTOTHIORHODOSPIRA HALOPHILA authKW 245577 1% 60% 6
6 LOW BARRIER HYDROGEN BOND LBHB authKW 136434 0% 100% 2
7 PYP CHROMOPHORE authKW 136434 0% 100% 2
8 OXYGEN MICROSCOPY COMI address 90955 0% 67% 2
9 PHOTORECEPTOR PROTEIN authKW 90955 0% 67% 2
10 PHOTOACTIVE PROTEINS authKW 76741 1% 38% 3

Web of Science journal categories



chi_square_rank Category chi_square shrOfCwithTerm shrOfTermInClass termInClass
1 Biophysics 2414 26% 0% 122
2 Biochemistry & Molecular Biology 1222 44% 0% 201
3 Chemistry, Physical 1009 32% 0% 150
4 Physics, Atomic, Molecular & Chemical 765 17% 0% 78
5 Chemistry, Multidisciplinary 60 10% 0% 48
6 Crystallography 24 3% 0% 12
7 Biochemical Research Methods 14 3% 0% 13
8 Cell Biology 5 4% 0% 18
9 Spectroscopy 2 1% 0% 6
10 Optics 1 2% 0% 10

Address terms



chi_square_rank term chi_square shrOfCwithTerm shrOfTermInClass termInClass
1 OXYGEN MICROSCOPY COMI 90955 0% 67% 2
2 BIOL INFORMAT PROC CELLULAR SIGNALLING 1 68217 0% 100% 1
3 C TVENTURE BUSINESS 68217 0% 100% 1
4 COMPUTAT THEORET BIOPHYS 68217 0% 100% 1
5 EXPT ANDEWANDTE PHYS 2 68217 0% 100% 1
6 GRP PHOTOCHIM ULTRAR IDE 68217 0% 100% 1
7 HOLLAND MOL CHEM 68217 0% 100% 1
8 INTERDISCIPINARY BASIC SCI 68217 0% 100% 1
9 MICROBIOL SILS 68217 0% 100% 1
10 NANOSECI TECHNOL WCU 68217 0% 100% 1

Journals



chi_square_rank term chi_square shrOfCwithTerm shrOfTermInClass termInClass
1 PHOTOCHEMICAL & PHOTOBIOLOGICAL SCIENCES 4698 3% 0% 14
2 BIOCHEMISTRY 4247 13% 0% 58
3 BIOPHYSICAL JOURNAL 4198 8% 0% 35
4 PHOTOCHEMISTRY AND PHOTOBIOLOGY 3528 5% 0% 21
5 JOURNAL OF PHYSICAL CHEMISTRY B 2759 9% 0% 40
6 STRUCTURAL DYNAMICS 1815 0% 1% 2
7 NATURE STRUCTURAL BIOLOGY 685 1% 0% 4
8 PHYSICAL CHEMISTRY CHEMICAL PHYSICS 574 3% 0% 16
9 PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS 499 2% 0% 7
10 CHEMICAL PHYSICS LETTERS 491 4% 0% 19

Author Key Words



chi_square_rank term chi_square shrOfCwithTerm shrOfTermInClass termInClass LCSH search Wikipedia search
1 PHOTOACTIVE YELLOW PROTEIN 2423487 10% 79% 45 Search PHOTOACTIVE+YELLOW+PROTEIN Search PHOTOACTIVE+YELLOW+PROTEIN
2 PHOTOACTIVE YELLOW PROTEIN PYP 371402 2% 78% 7 Search PHOTOACTIVE+YELLOW+PROTEIN+PYP Search PHOTOACTIVE+YELLOW+PROTEIN+PYP
3 XANTHOPSINS 272869 1% 100% 4 Search XANTHOPSINS Search XANTHOPSINS
4 PYP 272865 1% 67% 6 Search PYP Search PYP
5 ECTOTHIORHODOSPIRA HALOPHILA 245577 1% 60% 6 Search ECTOTHIORHODOSPIRA+HALOPHILA Search ECTOTHIORHODOSPIRA+HALOPHILA
6 LOW BARRIER HYDROGEN BOND LBHB 136434 0% 100% 2 Search LOW+BARRIER+HYDROGEN+BOND+LBHB Search LOW+BARRIER+HYDROGEN+BOND+LBHB
7 PYP CHROMOPHORE 136434 0% 100% 2 Search PYP+CHROMOPHORE Search PYP+CHROMOPHORE
8 PHOTORECEPTOR PROTEIN 90955 0% 67% 2 Search PHOTORECEPTOR+PROTEIN Search PHOTORECEPTOR+PROTEIN
9 PHOTOACTIVE PROTEINS 76741 1% 38% 3 Search PHOTOACTIVE+PROTEINS Search PHOTOACTIVE+PROTEINS
10 TIME RESOLVED CRYSTALLOGRAPHY 71052 1% 21% 5 Search TIME+RESOLVED+CRYSTALLOGRAPHY Search TIME+RESOLVED+CRYSTALLOGRAPHY

Core articles

The table includes core articles in the class. The following variables is taken into account for the relevance score of an article in a cluster c:
(1) Number of references referring to publications in the class.
(2) Share of total number of active references referring to publications in the class.
(3) Age of the article. New articles get higher score than old articles.
(4) Citation rate, normalized to year.

Classes with closest relation at Level 1



rank cluster_id2 link
1 13710 LOV DOMAIN//BLUF//BLUF DOMAIN
2 16141 LAUE DIFFRACTION//JOURNAL OF APPLIED CRYSTALLOGRAPHY//LAUE METHOD
3 12496 PHYCOCYANOBILIN//PHYTOCHROME//CYANOBACTERIOCHROME
4 2409 RHODOPSIN//RETINAL//BATHORHODOPSIN
5 22523 FIXL//COOA//HEME SENSOR
6 3226 MACROMOLECULAR CRYSTALLOGRAPHY//ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY//ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY
7 15031 LINK ATOM//EXTREMELY LOCALIZED MOLECULAR ORBITALS//QM MM
8 30769 AB INITIO MRMP2 CALCULATIONS//AB INITIO CASSCF CALCULATIONS//ARYL ETHER PHOTOCHEMISTRY
9 13458 KETOSTEROID ISOMERASE//LOW BARRIER HYDROGEN BOND//JULIUS SPOKOJNY BIOORGAN CHEM
10 23170 NEUTRON CRYSTALLOGRAPHY//NEUTRON PROTEIN CRYSTALLOGRAPHY//WAVELENGTH SHIFTING FIBER

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