Class information for:
Level 1: GENERALIZED ENSEMBLE ALGORITHM//REPLICA EXCHANGE METHOD//SOFT MATTER SYST GRP

Basic class information
Bar chart of Publication_year

Last years might be incomplete

Hierarchy of classes
The table includes all classes above and classes immediately below the current class.


Cluster id Level Cluster label #P
6 4 CHEMISTRY, ORGANIC//CHEMISTRY, INORGANIC & NUCLEAR//CHEMISTRY, MULTIDISCIPLINARY 1698077
156 3       PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS//PROTEIN FOLDING//PROTEIN STRUCTURE PREDICTION 63028
2461 2             HP MODEL//ENHANCED SAMPLING//JOURNAL OF CHEMICAL THEORY AND COMPUTATION 4231
6490 1                   GENERALIZED ENSEMBLE ALGORITHM//REPLICA EXCHANGE METHOD//SOFT MATTER SYST GRP 1507

Terms with highest relevance score


rank Category termType chi_square shrOfCwithTerm shrOfTermInClass termInClass
1 GENERALIZED ENSEMBLE ALGORITHM authKW 314542 1% 79% 19
2 REPLICA EXCHANGE METHOD authKW 301112 2% 60% 24
3 SOFT MATTER SYST GRP address 281756 1% 84% 16
4 GENERALIZED ENSEMBLE authKW 196332 1% 72% 13
5 MULTICANONICAL SIMULATION authKW 194638 1% 85% 11
6 THEORET SCI NTZ address 191165 2% 38% 24
7 MULTICANONICAL authKW 177129 1% 71% 12
8 TRP CAGE authKW 156824 1% 50% 15
9 GENERALIZED ENSEMBLE SIMULATIONS authKW 148705 1% 89% 8
10 SIMULATED TEMPERING authKW 147384 1% 41% 17

Web of Science journal categories


chi_square_rank Category chi_square shrOfCwithTerm shrOfTermInClass termInClass
1 Physics, Atomic, Molecular & Chemical 9682 32% 0% 480
2 Physics, Mathematical 8822 22% 0% 327
3 Chemistry, Physical 5021 39% 0% 591
4 Physics, Fluids & Plasmas 2648 11% 0% 161
5 Computer Science, Interdisciplinary Applications 1725 10% 0% 146
6 Physics, Multidisciplinary 1062 14% 0% 204
7 Biophysics 305 6% 0% 93
8 Chemistry, Multidisciplinary 117 9% 0% 133
9 Biochemistry & Molecular Biology 27 9% 0% 130
10 Mathematical & Computational Biology 20 1% 0% 15

Address terms


chi_square_rank term chi_square shrOfCwithTerm shrOfTermInClass termInClass
1 SOFT MATTER SYST GRP 281756 1% 84% 16
2 THEORET SCI NTZ 191165 2% 38% 24
3 ADV SIMULAT IAS 2 104560 0% 100% 5
4 SIMULAT PHYS 103724 3% 11% 47
5 FUNCT MOL SCI 99593 3% 13% 38
6 FESTKORPERFOR IFF 2 83648 0% 100% 4
7 THEORET STUDIES 68256 4% 6% 58
8 JOHN VON NEUMAN COMP 62736 0% 100% 3
9 PROT INFORMAT 52265 1% 25% 10
10 JOHN VON NEUMANN COMP 50634 1% 12% 21

Journals


chi_square_rank term chi_square shrOfCwithTerm shrOfTermInClass termInClass
1 JOURNAL OF CHEMICAL THEORY AND COMPUTATION 27899 5% 2% 81
2 JOURNAL OF COMPUTATIONAL CHEMISTRY 15305 5% 1% 68
3 COMPUTER PHYSICS COMMUNICATIONS 15098 5% 1% 74
4 JOURNAL OF CHEMICAL PHYSICS 15082 17% 0% 252
5 INTERNATIONAL JOURNAL OF MODERN PHYSICS C 12032 3% 1% 42
6 PHYSICAL REVIEW E 9557 11% 0% 159
7 MOLECULAR SIMULATION 7410 2% 1% 31
8 JOURNAL OF PHYSICAL CHEMISTRY B 3238 5% 0% 79
9 INTERNATIONAL JOURNAL OF MODERN PHYSICS C-PHYSICS AND COMPUTERS 2036 0% 5% 2
10 PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS 1802 2% 0% 24

Author Key Words


chi_square_rank term chi_square shrOfCwithTerm shrOfTermInClass termInClass LCSH search Wikipedia search
1 GENERALIZED ENSEMBLE ALGORITHM 314542 1% 79% 19 Search GENERALIZED+ENSEMBLE+ALGORITHM Search GENERALIZED+ENSEMBLE+ALGORITHM
2 REPLICA EXCHANGE METHOD 301112 2% 60% 24 Search REPLICA+EXCHANGE+METHOD Search REPLICA+EXCHANGE+METHOD
3 GENERALIZED ENSEMBLE 196332 1% 72% 13 Search GENERALIZED+ENSEMBLE Search GENERALIZED+ENSEMBLE
4 MULTICANONICAL SIMULATION 194638 1% 85% 11 Search MULTICANONICAL+SIMULATION Search MULTICANONICAL+SIMULATION
5 MULTICANONICAL 177129 1% 71% 12 Search MULTICANONICAL Search MULTICANONICAL
6 TRP CAGE 156824 1% 50% 15 Search TRP+CAGE Search TRP+CAGE
7 GENERALIZED ENSEMBLE SIMULATIONS 148705 1% 89% 8 Search GENERALIZED+ENSEMBLE+SIMULATIONS Search GENERALIZED+ENSEMBLE+SIMULATIONS
8 SIMULATED TEMPERING 147384 1% 41% 17 Search SIMULATED+TEMPERING Search SIMULATED+TEMPERING
9 MULTICANONICAL ALGORITHM 139406 1% 67% 10 Search MULTICANONICAL+ALGORITHM Search MULTICANONICAL+ALGORITHM
10 MULTICANONICAL MOLECULAR DYNAMICS 139406 1% 67% 10 Search MULTICANONICAL+MOLECULAR+DYNAMICS Search MULTICANONICAL+MOLECULAR+DYNAMICS

Core articles
The table includes core articles in the class. The following variables is taken into account for the relevance score of an article in a cluster c:
(1) Number of references referring to publications in the class.
(2) Share of total number of active references referring to publications in the class.
(3) Age of the article. New articles get higher score than old articles.
(4) Citation rate, normalized to year.

Classes with closest relation at Level 1


rank cluster_id2 link
1 6229 MARKOV STATE MODEL//ENHANCED SAMPLING//IST SCI COMPUTAZ
2 23243 HP MODEL//AB OFF LATTICE MODEL//PROTEIN FOLDING PROBLEM
3 16243 BAKER CHEM CHEM BIOL//UNRES FORCE FIELD//CONFORMATIONAL SPACE ANNEALING
4 3975 BETA HAIRPIN//ALPHA HELIX//SIDE CHAIN INTERACTIONS
5 4262 FREE ENERGY CALCULATIONS//FREE ENERGY PERTURBATION//THERMODYNAMIC INTEGRATION
6 536 PROTEIN FOLDING//PHI VALUE//FOLDING RATE
7 5146 GIBBS ENSEMBLE//MOLECULAR SIMULATION//LAND UMWELT ENERGIETECH
8 2281 ISING MODEL//CLUSTER ALGORITHM//FINITE SIZE SCALING
9 21460 MULTIPLE TIME STEP//SHAKE//SYMPLECTIC INTEGRATION METHODS
10 4506 POISSON BOLTZMANN EQUATION//POISSON BOLTZMANN//IMPLICIT SOLVENT MODEL

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