Class information for:
Level 1: TRIGGER FACTOR//COTRANSLATIONAL FOLDING//NASCENT CHAIN

Basic class information
Class id #P Avg. number of
references		 Database coverage
of references
24205 320 43.1 87%


Bar chart of Publication_year

Last years might be incomplete

Hierarchy of classes
The table includes all classes above and classes immediately below the current class.


Cluster id Level Cluster label #P
0 4 BIOCHEMISTRY & MOLECULAR BIOLOGY//CELL BIOLOGY//ONCOLOGY 4064930
153 3       BIOCHEMISTRY & MOLECULAR BIOLOGY//RIBOSOME//RNA 62593
1297 2             RIBOSOME//TRANSLATION TERMINATION//TMRNA 8599
24205 1                   TRIGGER FACTOR//COTRANSLATIONAL FOLDING//NASCENT CHAIN 320

Terms with highest relevance score


rank Term termType Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 TRIGGER FACTOR authKW 1432137 13% 37% 41
2 COTRANSLATIONAL FOLDING authKW 687020 6% 40% 18
3 NASCENT CHAIN authKW 654315 4% 57% 12
4 HSP33 authKW 555181 3% 73% 8
5 CO TRANSLATIONAL PROTEIN FOLDING authKW 265058 2% 56% 5
6 CNRS UPS2682 address 190845 1% 100% 2
7 DOMAIN V OF 23S RRNA authKW 190845 1% 100% 2
8 MECHANISM OF FOLDING authKW 190845 1% 100% 2
9 RIBOSOME BOUND NASCENT CHAIN authKW 190845 1% 100% 2
10 VECTORIAL FOLDING authKW 190845 1% 100% 2

Web of Science journal categories


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 Biochemistry & Molecular Biology 3086 78% 0% 251
2 Biophysics 828 19% 0% 61
3 Cell Biology 661 24% 0% 78
4 Biochemical Research Methods 92 7% 0% 21
5 Mathematical & Computational Biology 33 2% 0% 7
6 Microbiology 27 5% 0% 17
7 Biotechnology & Applied Microbiology 14 4% 0% 14
8 Spectroscopy 3 2% 0% 5
9 Multidisciplinary Sciences 1 1% 0% 2
10 Crystallography 0 1% 0% 3

Address terms


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 CNRS UPS2682 190845 1% 100% 2
2 BIOPHYS MOL BIOL GENET 185339 4% 15% 13
3 PROT PHOSPHORYLAT DIS 143131 1% 50% 3
4 IBGC UMR CNRS 5095 127229 1% 67% 2
5 BIOL 68 340D 95422 0% 100% 1
6 BIOPHYS MOLEC BIOL GENET 95422 0% 100% 1
7 CELLULAR BIOPHYS ISB 1 95422 0% 100% 1
8 CHRU B THOP MORVAN GENET MOLU613 95422 0% 100% 1
9 CRUD 95422 0% 100% 1
10 EF RU B THOP MORVAN GENET MOL 95422 0% 100% 1

Journals


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 ANNUAL REVIEW OF BIOPHYSICS 1974 1% 1% 2
2 NATURE STRUCTURAL & MOLECULAR BIOLOGY 1580 2% 0% 6
3 JOURNAL OF MOLECULAR BIOLOGY 1457 6% 0% 19
4 CURRENT OPINION IN STRUCTURAL BIOLOGY 1040 2% 0% 5
5 BIOTECHNOLOGY JOURNAL 867 1% 0% 3
6 CRITICAL REVIEWS IN BIOCHEMISTRY AND MOLECULAR BIOLOGY 719 1% 0% 2
7 STRUCTURE 620 2% 0% 5
8 FEBS LETTERS 580 5% 0% 16
9 JOURNAL OF BIOLOGICAL CHEMISTRY 569 10% 0% 31
10 BIOCHIMIE 564 2% 0% 6

Author Key Words


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class		 LCSH search Wikipedia search
1 TRIGGER FACTOR 1432137 13% 37% 41 Search TRIGGER+FACTOR Search TRIGGER+FACTOR
2 COTRANSLATIONAL FOLDING 687020 6% 40% 18 Search COTRANSLATIONAL+FOLDING Search COTRANSLATIONAL+FOLDING
3 NASCENT CHAIN 654315 4% 57% 12 Search NASCENT+CHAIN Search NASCENT+CHAIN
4 HSP33 555181 3% 73% 8 Search HSP33 Search HSP33
5 CO TRANSLATIONAL PROTEIN FOLDING 265058 2% 56% 5 Search CO+TRANSLATIONAL+PROTEIN+FOLDING Search CO+TRANSLATIONAL+PROTEIN+FOLDING
6 DOMAIN V OF 23S RRNA 190845 1% 100% 2 Search DOMAIN+V+OF+23S+RRNA Search DOMAIN+V+OF+23S+RRNA
7 MECHANISM OF FOLDING 190845 1% 100% 2 Search MECHANISM+OF+FOLDING Search MECHANISM+OF+FOLDING
8 RIBOSOME BOUND NASCENT CHAIN 190845 1% 100% 2 Search RIBOSOME+BOUND+NASCENT+CHAIN Search RIBOSOME+BOUND+NASCENT+CHAIN
9 VECTORIAL FOLDING 190845 1% 100% 2 Search VECTORIAL+FOLDING Search VECTORIAL+FOLDING
10 ANTIPRION COMPOUNDS 127229 1% 67% 2 Search ANTIPRION+COMPOUNDS Search ANTIPRION+COMPOUNDS

Core articles
The table includes core articles in the class. The following variables is taken into account for the relevance score of an article in a cluster c:
(1) Number of references referring to publications in the class.
(2) Share of total number of active references referring to publications in the class.
(3) Age of the article. New articles get higher score than old articles.
(4) Citation rate, normalized to year.


Rank Reference # ref.
in cl.		 Shr. of ref. in
cl.		 Citations
1 HOFFMANN, A , BUKAU, B , KRAMER, G , (2010) STRUCTURE AND FUNCTION OF THE MOLECULAR CHAPERONE TRIGGER FACTOR.BIOCHIMICA ET BIOPHYSICA ACTA-MOLECULAR CELL RESEARCH. VOL. 1803. ISSUE 6. P. 650-661 62 45% 68
2 HOFFMANN, A , BECKER, AH , ZACHMANN-BRAND, B , DEUERLING, E , BUKAU, B , KRAMER, G , (2012) CONCERTED ACTION OF THE RIBOSOME AND THE ASSOCIATED CHAPERONE TRIGGER FACTOR CONFINES NASCENT POLYPEPTIDE FOLDING.MOLECULAR CELL. VOL. 48. ISSUE 1. P. 63-74 32 64% 35
3 LIU, CP , ZHOU, QM , FAN, DJ , ZHOU, JM , (2010) PPIASE DOMAIN OF TRIGGER FACTOR ACTS AS AUXILIARY CHAPERONE SITE TO ASSIST THE FOLDING OF PROTEIN SUBSTRATES BOUND TO THE CREVICE OF TRIGGER FACTOR.INTERNATIONAL JOURNAL OF BIOCHEMISTRY & CELL BIOLOGY. VOL. 42. ISSUE 6. P. 890-901 35 67% 11
4 LAKSHMIPATHY, SK , TOMIC, S , KAISER, CM , CHANG, HC , GENEVAUX, P , GEORGOPOULOS, C , BARRAL, JM , JOHNSON, AE , HARTL, FU , ETCHELLS, SA , (2007) IDENTIFICATION OF NASCENT CHAIN INTERACTION SITES ON TRIGGER FACTOR.JOURNAL OF BIOLOGICAL CHEMISTRY. VOL. 282. ISSUE 16. P. 12186-12193 25 76% 40
5 DECKERT, A , WAUDBY, CA , WLODARSKI, T , WENTINK, AS , WANG, XL , KIRKPATRICK, JP , PATON, JFS , CAMILLONI, C , KUKIC, P , DOBSON, CM , ET AL (2016) STRUCTURAL CHARACTERIZATION OF THE INTERACTION OF ALPHA-SYNUCLEIN NASCENT CHAINS WITH THE RIBOSOMAL SURFACE AND TRIGGER FACTOR.PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. VOL. 113. ISSUE 18. P. 5012 -5017 28 51% 2
6 FAN, DJ , DING, YW , PAN, XM , ZHOU, JM , (2008) THERMAL UNFOLDING OF ESCHERICHIA COLI TRIGGER FACTOR STUDIED BY ULTRA-SENSITIVE DIFFERENTIAL SCANNING CALORIMETRY.BIOCHIMICA ET BIOPHYSICA ACTA-PROTEINS AND PROTEOMICS. VOL. 1784. ISSUE 11. P. 1728-1734 24 80% 6
7 SINGHAL, K , VREEDE, J , MASHAGHI, A , TANS, SJ , BOLHUIS, PG , (2013) HYDROPHOBIC COLLAPSE OF TRIGGER FACTOR MONOMER IN SOLUTION.PLOS ONE. VOL. 8. ISSUE 4. P. - 27 63% 2
8 MERZ, F , HOFFMANN, A , RUTKOWSKA, A , ZACHMANN-BRAND, B , BUKAU, B , DEUERLING, E , (2006) THE C-TERMINAL DOMAIN OF ESCHERICHIA COLI TRIGGER FACTOR REPRESENTS THE CENTRAL MODULE OF ITS CHAPERONE ACTIVITY.JOURNAL OF BIOLOGICAL CHEMISTRY. VOL. 281. ISSUE 42. P. 31963-31971 26 72% 47
9 ZENG, LL , YU, L , LI, ZY , PERRETT, S , ZHOU, JM , (2006) EFFECT OF C-TERMINAL TRUNCATION ON THE MOLECULAR CHAPERONE FUNCTION AND DIMERIZATION OF ESCHERICHIA COLI TRIGGER FACTOR.BIOCHIMIE. VOL. 88. ISSUE 6. P. 613-619 26 76% 8
10 SHI, Y , YU, L , KIHARA, H , ZHOU, JM , (2014) C-TERMINAL 13-RESIDUE TRUNCATION INDUCES COMPACT TRIGGER FACTOR CONFORMATION AND SEVERELY IMPAIRS ITS DIMERIZATION ABILITY.PROTEIN AND PEPTIDE LETTERS. VOL. 21. ISSUE 5. P. 476-482 22 73% 1

Classes with closest relation at Level 1


Rank Class id link
1 6152 DNAJ//DNAK//GRPE
2 4088 CHAPERONIN//GROEL//GROES
3 30868 NASCENT POLYPEPTIDE ASSOCIATED COMPLEX//ALPHA NAC//FIAT
4 4955 SIGNAL RECOGNITION PARTICLE//TRANSLOCON//FFH
5 360 RIBOSOME//PEPTIDYL TRANSFERASE//AG RIBOSOMEN
6 2829 CODON USAGE//CODON USAGE BIAS//SYNONYMOUS CODON USAGE
7 12865 CELL FREE PROTEIN SYNTHESIS//CELL FREE EXPRESSION//CELL FREE
8 2873 CYCLOPHILIN//PEPTIDYL PROLYL CIS TRANS ISOMERASE//IMMUNOPHILIN
9 14625 RIBOSOME DISPLAY//MRNA DISPLAY//FOUR BASE CODON
10 2349 SECA//SECB//SECYEG

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