Class information for:
Level 2: TFIID//RNA POLYMERASE II//MEDIATOR COMPLEX

Basic class information
Class id #P Avg. number of
references		 Database coverage
of references
2504 3873 46.7 88%


Bar chart of Publication_year

Last years might be incomplete

Hierarchy of classes
The table includes all classes above and classes immediately below the current class.


Cluster id Level Cluster label #P
0 4 BIOCHEMISTRY & MOLECULAR BIOLOGY//CELL BIOLOGY//ONCOLOGY 4064930
71 3       GENETICS & HEREDITY//CHROMATIN//CELL BIOLOGY 83302
2504 2             TFIID//RNA POLYMERASE II//MEDIATOR COMPLEX 3873
2863 1                   TFIID//GENERAL TRANSCRIPTION FACTORS//TFIIA 2128
13537 1                   MEDIATOR COMPLEX//CDK8//MED12 830
17211 1                   RPB4//RPB7//INTERSPECIFIC COMPLEMENTATION 611
27003 1                   REPTIN//R2TP//TIP49 240
37211 1                   EDF 1//MBF1//MULTIPROTEIN BRIDGING FACTOR 1 MBF1 64

Terms with highest relevance score


rank Term termType Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 TFIID authKW 524361 2% 72% 93
2 RNA POLYMERASE II authKW 306040 5% 21% 181
3 MEDIATOR COMPLEX authKW 270397 1% 84% 41
4 GENERAL TRANSCRIPTION FACTORS authKW 186586 1% 72% 33
5 TFIIA authKW 146447 1% 77% 24
6 CDK8 authKW 137306 1% 62% 28
7 TFIIB authKW 121079 1% 59% 26
8 TATA BINDING PROTEIN authKW 110457 1% 37% 38
9 TBP authKW 98466 2% 16% 77
10 PREINITIATION COMPLEX authKW 96949 1% 53% 23

Web of Science journal categories


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with term
in class
1 Biochemistry & Molecular Biology 31593 73% 0% 2811
2 Cell Biology 23643 40% 0% 1557
3 Genetics & Heredity 3683 14% 0% 540
4 Developmental Biology 2843 6% 0% 224
5 Biophysics 930 7% 0% 258
6 Biochemical Research Methods 139 3% 0% 116
7 Biology 79 2% 0% 78
8 Mycology 45 1% 0% 23
9 Plant Sciences 17 3% 0% 103
10 Oncology 12 3% 0% 127

Address terms


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 LI KA SHING BIOMED HLTH SCI 53259 0% 48% 14
2 CREAT INITIAT GENOME REGULAT 32841 0% 83% 5
3 ROGER ADAMS 430 25222 0% 80% 4
4 GENE FUNCT ANIM 24132 0% 26% 12
5 FYSIOL CHEM 23647 0% 100% 3
6 NUCL ACIDS ENZYMOL 22711 0% 41% 7
7 GENET BIOL MOL CELLULAIRE 20149 2% 4% 62
8 HEMATOL HEMATOL SCI 18910 0% 40% 6
9 SECT NMR SPECT 17734 0% 75% 3
10 BIOCHEM MOLEC BIOL 1230 YORK AVE 15765 0% 100% 2

Journals


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 MOLECULAR AND CELLULAR BIOLOGY 47525 9% 2% 367
2 GENES & DEVELOPMENT 15095 3% 2% 120
3 JOURNAL OF BIOLOGICAL CHEMISTRY 11332 12% 0% 476
4 MOLECULAR CELL 11313 2% 2% 89
5 NUCLEIC ACIDS RESEARCH 7555 5% 1% 198
6 CELL 7296 3% 1% 119
7 PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 4282 6% 0% 235
8 GENES TO CELLS 3414 1% 2% 29
9 EMBO JOURNAL 3351 2% 1% 87
10 TRENDS IN BIOCHEMICAL SCIENCES 2266 1% 1% 33

Author Key Words


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class		 LCSH search Wikipedia search
1 TFIID 524361 2% 72% 93 Search TFIID Search TFIID
2 RNA POLYMERASE II 306040 5% 21% 181 Search RNA+POLYMERASE+II Search RNA+POLYMERASE+II
3 MEDIATOR COMPLEX 270397 1% 84% 41 Search MEDIATOR+COMPLEX Search MEDIATOR+COMPLEX
4 GENERAL TRANSCRIPTION FACTORS 186586 1% 72% 33 Search GENERAL+TRANSCRIPTION+FACTORS Search GENERAL+TRANSCRIPTION+FACTORS
5 TFIIA 146447 1% 77% 24 Search TFIIA Search TFIIA
6 CDK8 137306 1% 62% 28 Search CDK8 Search CDK8
7 TFIIB 121079 1% 59% 26 Search TFIIB Search TFIIB
8 TATA BINDING PROTEIN 110457 1% 37% 38 Search TATA+BINDING+PROTEIN Search TATA+BINDING+PROTEIN
9 TBP 98466 2% 16% 77 Search TBP Search TBP
10 PREINITIATION COMPLEX 96949 1% 53% 23 Search PREINITIATION+COMPLEX Search PREINITIATION+COMPLEX

Core articles
The table includes core articles in the class. The following variables is taken into account for the relevance score of an article in a cluster c:
(1) Number of references referring to publications in the class.
(2) Share of total number of active references referring to publications in the class.
(3) Age of the article. New articles get higher score than old articles.
(4) Citation rate, normalized to year.


Rank Reference # ref. in
cl.		 Shr. of ref. in
cl.		 Citations
1 THOMAS, MC , CHIANG, CM , (2006) THE GENERAL TRANSCRIPTION MACHINERY AND GENERAL COFACTORS.CRITICAL REVIEWS IN BIOCHEMISTRY AND MOLECULAR BIOLOGY. VOL. 41. ISSUE 3. P. 105-178 449 60% 367
2 POSS, ZC , EBMEIER, CC , TAATJES, DJ , (2013) THE MEDIATOR COMPLEX AND TRANSCRIPTION REGULATION.CRITICAL REVIEWS IN BIOCHEMISTRY AND MOLECULAR BIOLOGY. VOL. 48. ISSUE 6. P. 575-608 294 67% 83
3 SAINSBURY, S , BERNECKY, C , CRAMER, P , (2015) STRUCTURAL BASIS OF TRANSCRIPTION INITIATION BY RNA POLYMERASE II.NATURE REVIEWS MOLECULAR CELL BIOLOGY. VOL. 16. ISSUE 3. P. 129 -143 182 74% 33
4 HAMPSEY, M , (1998) MOLECULAR GENETICS OF THE RNA POLYMERASE II GENERAL TRANSCRIPTIONAL MACHINERY.MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS. VOL. 62. ISSUE 2. P. 465-+ 301 55% 379
5 ALLEN, BL , TAATJES, DJ , (2015) THE MEDIATOR COMPLEX: A CENTRAL INTEGRATOR OF TRANSCRIPTION.NATURE REVIEWS MOLECULAR CELL BIOLOGY. VOL. 16. ISSUE 3. P. 155 -166 123 63% 69
6 ORPHANIDES, G , LAGRANGE, T , REINBERG, D , (1996) THE GENERAL TRANSCRIPTION FACTORS OF RNA POLYMERASE II.GENES & DEVELOPMENT. VOL. 10. ISSUE 21. P. 2657-2683 182 69% 729
7 ANSARI, SA , MORSE, RH , (2013) MECHANISMS OF MEDIATOR COMPLEX ACTION IN TRANSCRIPTIONAL ACTIVATION.CELLULAR AND MOLECULAR LIFE SCIENCES. VOL. 70. ISSUE 15. P. 2743-2756 132 83% 35
8 SMALE, ST , KADONAGA, JT , (2003) THE RNA POLYMERASE II CORE PROMOTER.ANNUAL REVIEW OF BIOCHEMISTRY. VOL. 72. ISSUE . P. 449-479 146 66% 565
9 MALIK, S , ROEDER, RG , (2010) THE METAZOAN MEDIATOR CO-ACTIVATOR COMPLEX AS AN INTEGRATIVE HUB FOR TRANSCRIPTIONAL REGULATION.NATURE REVIEWS GENETICS. VOL. 11. ISSUE 11. P. 761-772 97 78% 275
10 BORGGREFE, T , YUE, XJ , (2011) INTERACTIONS BETWEEN SUBUNITS OF THE MEDIATOR COMPLEX WITH GENE-SPECIFIC TRANSCRIPTION FACTORS.SEMINARS IN CELL & DEVELOPMENTAL BIOLOGY. VOL. 22. ISSUE 7. P. 759-768 115 86% 52

Classes with closest relation at Level 2


Rank Class id link
1 3263 CTCF//CONTROL GENET PROC//NF Y
2 343 EZH2//CHROMATIN//POLYCOMB
3 371 RNA POLYMERASE//HFQ//JOURNAL OF BACTERIOLOGY
4 156 NUCLEAR PORE COMPLEX//PRE MRNA SPLICING//SPLICEOSOME
5 1084 AMINOACYL TRNA SYNTHETASE//TRNA//AMINOACYL TRANSFER RNA SYNTHETASE
6 225 YEAST//SACCHAROMYCES CEREVISIAE//SCHIZOSACCHAROMYCES POMBE
7 3833 CITED2//BRANCHIO OCULO FACIAL SYNDROME//AP 2 ALPHA
8 2151 ADENOVIRUS//E1A//EPIDEMIC KERATOCONJUNCTIVITIS
9 1020 NUCLEOLUS//RIBOSOME BIOGENESIS//SNORNA
10 1593 XERODERMA PIGMENTOSUM//COCKAYNE SYNDROME//NUCLEOTIDE EXCISION REPAIR

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