BB2491 Analysis of Data from High-Throughput Molecular Biology Experiments 7.0 credits

Analys av data från storskaliga molekylärbiologiska experiment

Offering and execution

Course offering missing for current semester as well as for previous and coming semesters

Course information

Content and learning outcomes

Course contents *

The course contains the fundamental theory of bioinformatics analysis of large data sets from high-throughput genomics, transcriptomics, and proteomics experiments – in particular, massively parallel DNA sequencing and protein mass spectrometry: how this theory is implemented in state-of-the-art tools for analyzing the data; how these tools are applied on real high-throughput molecular biology data; and how the outcome of the analysis may be interpreted in a biologically or medically relevant context.

Intended learning outcomes *

After passing the course, the student should be able to:

1. Describe widely used high-throughput experimental techniques employed to investigate the DNA, RNA and protein contents of a cell, tissue, or organism.

2. Explain the theory of state-of-the-art tools/algorithms for processing data from high-throughput molecular biology experiments.

3. Choose appropriate tools for processing data from high-throughput molecular biology experiments.

4. Apply tools for processing data from high-throughput molecular biology experiments.

5. Interpret the results of these analyses in a biologically or medically relevant context.

6. Reflect over the choice of methods and tools and how it influences the outcome of the analyses.

Course Disposition

No information inserted

Literature and preparations

Specific prerequisites *

Admission requirements for programme students at KTH:
At least 150 credits from grades 1, 2 and 3 of which at least 100 credits from years 1 and 2, and bachelor's work must be completed.  The 150 credits should include a minimum of 20 credits within the fields of Mathematics, Numerical Analysis and Computer Sciences, 5 of these must be within the fields of Numerical Analysis and Computer Sciences, 20 credits of Chemistry, possibly including courses in Chemical Measuring Techniques and 20 credits of Biotechnology or Molecular Biology.

Admission requirements for independent students:
A total of 20 university credits (hp) in life science courses ( e.g. biochemistry, microbiology and gene technology/molecular biology). 10 university credits (hp) in mathematics and 3,5 university credits (hp) bioinformatics. Documented proficiency in English corresponding to English B.

 

Recommended prerequisites

The following courses, or equivalent, are recommended: Bioinformatics and basic probability theory corresponding to BB2440 Bioinformatics and Biostatistics, and probability theory corresponding to SF1901 Probability Theory and Statistics. Computer acquaintance equivalent to the course DD2404 Applied Bioinformatics.

Equipment

No information inserted

Literature

Scientific articles and web resources as assigned during the course. Handouts from the lectures.

Examination and completion

Grading scale *

A, B, C, D, E, FX, F

Examination *

  • LAB1 - Computer Exercises, 1.0 credits, Grading scale: P, F
  • PRO2 - Project, 6.0 credits, Grading scale: A, B, C, D, E, FX, F

Based on recommendation from KTH’s coordinator for disabilities, the examiner will decide how to adapt an examination for students with documented disability.

The examiner may apply another examination format when re-examining individual students.

No aids are allowed other than those specified in the course PM.

Other requirements for final grade *

The final grade on the course is determined by the grade on the project (PRO2, grade scale A-F) and the computer exercises (LAB1, grade scale P-F). There are parts of the course that has compulsory attendance.

Opportunity to complete the requirements via supplementary examination

No information inserted

Opportunity to raise an approved grade via renewed examination

No information inserted

Examiner

Lukas Käll

Further information

Course web

Further information about the course can be found on the Course web at the link below. Information on the Course web will later be moved to this site.

Course web BB2491

Offered by

CBH/Gene Technology

Main field of study *

Biotechnology

Education cycle *

Second cycle

Add-on studies

No information inserted

Ethical approach *

  • All members of a group are responsible for the group's work.
  • In any assessment, every student shall honestly disclose any help received and sources used.
  • In an oral assessment, every student shall be able to present and answer questions about the entire assignment and solution.