CB2060 Applied programming for life science 3 1.5 credits

Tillämpad programmering för livsvetenskaperna 3

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Offering and execution

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Course information

Content and learning outcomes

Course contents *

  • Scientific Python libraries: numpy, scipy, pandas
  • Workflows with git
  • Collaboration in open-source projects using GitHub
  • Unit testing with pytest and on-line tools for automatic testing and test coverage
  • The Python Package Index

Intended learning outcomes *

As a result of taking the course the student will be able to

  • Use common scientific software libraries
  • Work with version control as a personal backup tool and as a platform for collaboration
  • Develop code supported by unit testing
  • Document code with community standard tools
  • Structure and package code for publishing

Course Disposition

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Literature and preparations

Specific prerequisites *

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Recommended prerequisites

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Equipment

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Literature

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Examination and completion

Grading scale *

P, F

Examination *

  • LAB1 - Laboratory work, 1.5 credits, Grading scale: P, F

Based on recommendation from KTH’s coordinator for disabilities, the examiner will decide how to adapt an examination for students with documented disability.

The examiner may apply another examination format when re-examining individual students.

Other requirements for final grade *

Submission of laboratory assignments

Opportunity to complete the requirements via supplementary examination

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Opportunity to raise an approved grade via renewed examination

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Examiner

Olav Vahtras

Further information

Course web

Further information about the course can be found on the Course web at the link below. Information on the Course web will later be moved to this site.

Course web CB2060

Offered by

CBH/Theoretical Chemistry and Biology

Main field of study *

Biotechnology, Molecular Life Science

Education cycle *

Second cycle

Add-on studies

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Ethical approach *

  • All members of a group are responsible for the group's work.
  • In any assessment, every student shall honestly disclose any help received and sources used.
  • In an oral assessment, every student shall be able to present and answer questions about the entire assignment and solution.