Some notes regarding the homework assignments:

4. When I wrote "reviewing the performance of different multialignment algorithms", I meant a paper the does actual benchmarks. Picking up a review paper mentioning different softwares is not good enough.

6. I wrote "the reads have experienced both mutations and read errors" and that is badly phrased. What I meant was the the reads are from sequences that have experienced mutations compared to our reference, and that there are further differences due to read errors on top of that.

7. "efficient" means "polynomial time".