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Publications

Last 50 publications of the institution

[1]
Ashraf, S., Iqbal, S., Sebhaoui, J., Özcan, M., Kim, W., Belmen, B. ... Mardinoglu, A. (2024). Synthesis, spectroscopic characterization, DFT and molecular docking of N-(3-cyano-4,5,6,7-tetrahydrobenzo[b]thiophen-2-yl) naphthalene-1-sulfonamide derivatives. Journal of Molecular Structure, 1312.
[2]
Deyev, S. M., Oroujeni, M., Garousi, J., Gräslund, T., Li, R., Rosly, A. H. B. ... Tolmachev, V. (2024). Preclinical Evaluation of HER2-Targeting DARPin G3: Impact of Albumin-Binding Domain (ABD) Fusion. International Journal of Molecular Sciences, 25(8).
[3]
Bragina, O., Tashireva, L., Loos, D., Chernov, V., Hober, S. & Tolmachev, V. (2024). Evaluation of Approaches for the Assessment of HER2 Expression in Breast Cancer by Radionuclide Imaging Using the Scaffold Protein [<sup>99m</sup>Tc]Tc-ADAPT6. Pharmaceutics, 16(4).
[4]
Altay, Ö., Yang, H., Yildirim, S., Bayram, C., Bolat, I., Oner, S. ... Mardinoglu, A. (2024). Combined Metabolic Activators with Different NAD+ Precursors Improve Metabolic Functions in the Animal Models of Neurodegenerative Diseases. Biomedicines, 12(4).
[5]
Yang, H., Zhang, C., Kim, W., Shi, M., Kiliclioglu, M., Bayram, C. ... Mardinoglu, A. (2024). Multi-tissue network analysis reveals the effect of JNK inhibition on dietary sucrose-induced metabolic dysfunction in rats. .
[6]
Cadirci, K., Turkez, H., Tozlu, O. O., Yapca, O. E., Bayrak, M., Emsen, B. & Mardinoglu, A. (2024). In Vitro Cytotoxic, Genotoxic, Embryotoxic and Oxidative Damage Potentials by Empagliflozin. Biology Bulletin of the Russian Academy of Science, 51(2), 243-250.
[7]
Mravinacová, S. (2024). Multiplexed protein analysis in neurodegenerative diseases (Doctoral thesis , KTH Royal Institute of Technology, Stockholm, TRITA-CBH-FOU 2024:22). Retrieved from https://urn.kb.se/resolve?urn=urn:nbn:se:kth:diva-346233.
[8]
Parks, L. (2024). Development of directed-evolution methods utilizing combinatorial protein libraries in Escherichia coli (Doctoral thesis , KTH Royal Institute of Technology, Stockholm, TRITA-CBH-FOU 2024:10). Retrieved from https://urn.kb.se/resolve?urn=urn:nbn:se:kth:diva-346195.
[9]
Mohammadi, E., Dashti, S., Shafizade, N., Jin, H., Zhang, C., Lam, S. ... Sekhavati, M. H. (2024). Drug repositioning for immunotherapy in breast cancer using single-cell analysis. NPJ SYSTEMS BIOLOGY AND APPLICATIONS, 10(1).
[10]
Klevebro, S., Kebede Merid, S., Sjöbom, U., Zhong, W., Danielsson, H., Wackernagel, D. ... Nilsson, A. K. (2024). Arachidonic acid and docosahexaenoic acid levels correlate with the inflammation proteome in extremely preterm infants. Clinical Nutrition, 43(5), 1162-1170.
[11]
Fredolini, C., Dodig-Crnkovic, T., Bendes, A., Dahl, L., Dale, M., Albrecht, V. ... Schwenk, J. M. (2024). Proteome profiling of home-sampled dried blood spots reveals proteins of SARS-CoV-2 infections. Communications Medicine, 4(1).
[12]
Zeglio, E., Wang, Y., Jain, S., Lin, Y., Avila Ramirez, A. E., Feng, K. ... Herland, A. (2024). Mixing Insulating Commodity Polymers with Semiconducting n‐type Polymers Enables High‐Performance Electrochemical Transistors. Advanced Materials.
[13]
Jain, S., Voulgaris, D., Thongkorn, S., Hesen, R., Hägg, A., Moslem, M. ... Herland, A. (2024). On‐Chip Neural Induction Boosts Neural Stem Cell Commitment: Toward a Pipeline for iPSC‐Based Therapies. Advanced Science.
[14]
Hao, M.-S., Mazurkewich, S., Li, H., Kvammen, A., Saha, S., Koskela, S. ... McKee, L. S. (2024). Structural and biochemical analysis of family 92 carbohydrate-binding modules uncovers multivalent binding to β-glucans. Nature Communications, 15(1).
[15]
Kokare, S., Shoaib-ul-Hasan, S., Abdullah Asif, F. M., Mårtensson, G., Svanteson, K. (2024). Life Cycle Assessment of a Jet Printing and Dispensing Machine. In 5th International Conference on Industry 4.0 and Smart Manufacturing, ISM 2023. (pp. 708-718). Elsevier BV.
[16]
King, M. R., Ruff, K. M., Lin, A. Z., Pant, A., Farag, M., Lalmansingh, J. M. ... Pappu, R. V. (2024). Macromolecular condensation organizes nucleolar sub-phases to set up a pH gradient. Cell, 187(8), 24-1889.
[17]
Sariyar, S. (2024). Spatiotemporal Profiling of Human Development Using Multiplexed Imaging (Doctoral thesis , KTH Royal Institute of Technology, Sweden, TRITA-CBH-FOU 2024:14). Retrieved from https://urn.kb.se/resolve?urn=urn:nbn:se:kth:diva-345248.
[18]
Gnann, C. (2024). Finding order in chaos : Dissecting single-cell heterogeneity in space and time (Doctoral thesis , KTH Royal Institute of Technology, TRITA-CBH-FOU 2024:12). Retrieved from https://urn.kb.se/resolve?urn=urn:nbn:se:kth:diva-344949.
[19]
Yan, J., Bangalore, C. R., Nikouyan, N., Appelberg, S., Silva, D. N., Yao, H. ... Saellberg, M. (2024). Distinct roles of vaccine-induced SARS-CoV-2-specific neutralizing antibodies and T cells in protection and disease. Molecular Therapy, 32(2), 540-555.
[20]
Bidkhori, G. & Shoaie, S. (2024). MIGRENE : The Toolbox for Microbial and Individualized GEMs, Reactobiome and Community Network Modelling. Metabolites, 14(3).
[21]
Bonanini, F., Singh, M., Yang, H., Kurek, D., Harms, A. C., Mardinoglu, A. & Hankemeier, T. (2024). A comparison between different human hepatocyte models reveals profound differences in net glucose production, lipid composition and metabolism in vitro. Experimental Cell Research, 437(1).
[22]
Charras, Q., Rey, P., Guillemain, D., Dourguin, F., Laganier, H., Peschoux, S. ... Jungas, C. (2024). An efficient protocol for extracting thylakoid membranes and total leaf proteins from Posidonia oceanica and other polyphenol-rich plants. Plant Methods, 20(1).
[23]
Royer, P., Björnson, E., Adiels, M., Alvez, M. B., Fagerberg, L., Bäckhed, F. ... Bergström, G. (2024). Plasma proteomics for prediction of subclinical coronary artery calcifications in primary prevention. American Heart Journal, 271, 55-67.
[24]
Matić, J., Akladios, F., Battisti, U. M., Håversen, L., Nain-Perez, A., Füchtbauer, A. F. ... Grøtli, M. (2024). Sulfone-based human liver pyruvate kinase inhibitors – Design, synthesis and in vitro bioactivity. European Journal of Medicinal Chemistry, 269.
[25]
Reyes, D. R., Esch, M. B., Ewart, L., Nasiri, R., Herland, A., Sung, K. ... Ashammakhi, N. (2024). From animal testing to in vitro systems: advancing standardization in microphysiological systems. Lab on a Chip, 24(5), 1076-1087.
[26]
Löfgren, L., von Euler Chelpin, M., Bhat, M., Althage, M., Hober, A., Edfors, F. ... Miliotis, T. (2024). Patient-Centric Quantitative Microsampling for Accurate Determination of Urine Albumin to Creatinine Ratio (UACR) in a Clinical Setting. The Journal of Applied Laboratory Medicine, 9(2), 329-341.
[27]
Lu, C., Donners, M. M.P.C., de Baaij, J. B.J., Jin, H., Otten, J. J.T., Manca, M. ... Biessen, E. A.L. (2024). Identification of a gene network driving the attenuated response to lipopolysaccharide of monocytes from hypertensive coronary artery disease patients. Frontiers in Immunology, 15.
[28]
Nasiri, R., Zhu, Y. & de Barros, N. R. (2024). Microfluidics and Organ-on-a-Chip for Disease Modeling and Drug Screening. Biosensors, 14(2).
[29]
Michalettou, T. D., Hong, M.-G., Fernandez, J., Sharma, S., Brorsson, C., Koivula, R. ... Vinuela, A. (2024). Dissecting the interplay between ageing, sex and body mass index on a molecular level. European Journal of Human Genetics, 32, 656-657.
[30]
Hellquist, L. (2024). Selection of Affibody molecules towards an immuno-oncology target. .
[31]
Gustavsson, K. (2024). Biological Age and Risk of Developing Alzheimer's Disease and Related Dementias. .
[32]
Öling, S., Struck, E., Noreen-Thorsen, M., Zwahlen, M., von Feilitzen, K., Odeberg, J. ... Butler, L. M. (2024). A human stomach cell type transcriptome atlas. BMC Biology, 22(1).
[33]
Mravinacová, S., Alanko, V., Bergström, S., Bridel, C., Pijnenburg, Y., Hagman, G. ... Månberg, A. (2024). CSF protein ratios with enhanced potential to reflect Alzheimer’s disease pathology and neurodegeneration. Molecular Neurodegeneration, 19(1).
[34]
Sahi, M., Andersson, S., Mattsson, C., Dale, M., Kagiolglou, S., Hofström, C. ... Fredolini, C. (2024). Profiling of Surface Protein Epitopes on Viral Particles by Multiplex Dual-Reporter Strategy. Journal of Visualized Experiments, 2024(203).
[35]
Turkez, H., Arslan, M. E., Selvitopi, H., Kadi, A., Oner, S. & Mardinoglu, A. (2024). Drug Synergism of Anticancer Action in Combination with Favipiravir and Paclitaxel on Neuroblastoma Cells. Medicina, 60(1).
[36]
Buchmann, S. (2024). Organic Electronics and Microphysiological Systems to Interface, Monitor, and Model Biology (Doctoral thesis , Kungliga Tekniska högskolan, Stockholm, TRITA-CBH-FOU 2024:3). Retrieved from https://urn.kb.se/resolve?urn=urn:nbn:se:kth:diva-343016.
[37]
Lundmark, F., Vorobyeva, A., Liu, Y., Lindbo, S., Xu, T., Oroujeni, M. ... Garousi, J. (2024). Reduction of renal activity retention of radiolabeled albumin binding domain-derived affinity proteins using a non-residualizing label strategy compared with a cleavable glycine-leucine-glycine-lysine-linker. Molecular Medicine Reports, 29(2).
[38]
Parks, L., Ek, M., Ståhl, S. & Löfblom, J. (2024). Investigation of an AIDA-I based expression system for display of various affinity proteins on Escherichia coli. Biochemical and Biophysical Research Communications - BBRC, 696.
[39]
Pinto, S., Hosseini, M., Buckley, S. T., Yin, W., Garousi, J., Gräslund, T. ... Sarmento, B. (2024). Nanoparticles targeting the intestinal Fc receptor enhance intestinal cellular trafficking of semaglutide. Journal of Controlled Release, 366, 621-636.
[40]
Enrico, A., Buchmann, S., De Ferrari, F., Lin, Y., Wang, Y., Yue, W. ... Zeglio, E. (2024). Cleanroom‐Free Direct Laser Micropatterning of Polymers for Organic Electrochemical Transistors in Logic Circuits and Glucose Biosensors. Advanced Science.
[41]
Mebrahtu, A., Aniander, G., Mega, A., Moradi, M., Thalén, N., Gudmundsdotter, L. ... Rockberg, J. (2024). Co-culture platform for tuning of cancer receptor density allows for evaluation of bispecific immune cell engagers. New Biotechnology, 79, 120-126.
[42]
Reitzner, S. M., Emanuelsson, E. B., Arif, M., Kaczkowski, B., Kwon, A. T., Mardinoglu, A. ... Sundberg, C. J. (2024). Molecular profiling of high-level athlete skeletal muscle after acute endurance or resistance exercise : A systems biology approach. Molecular Metabolism, 79.
[43]
Gouleni, N., Di Rienzo, A., Oner, S., Karagoz, C., Arslan, M. E., Mardinoglu, A. ... Cacciatore, I. (2024). Anticancer Potential of Novel Cinnamoyl Derivatives against U87MG and SHSY-5Y Cell Lines. Anti-Cancer Agents in Medicinal Chemistry, 24(1), 39-49.
[44]
Struck, E. C., Belova, T., Hsieh, P. H., Odeberg, J., Kuijjer, M. L., Dusart, P. & Butler, L. M. (2024). Global Transcriptome Analysis Reveals Distinct Phases of the Endothelial Response to TNF. Journal of Immunology, 212(1), 117-129.
[45]
Marking, U., Bladh, O., Aguilera, K., Yang, Y., Greilert Norin, N., Blom, K. ... Thålin, C. (2024). Humoral immune responses to the monovalent xbb.1.5-adapted bnt162b2 mrna booster in sweden. The Lancet - Infectious diseases, 24(2), e80-e81.
[46]
Emanuelsson, E. B., Arif, M., Reitzner, S. M., Perez, S., Lindholm, M. E., Mardinoglu, A. ... Chapman, M. A. (2024). Remodeling of the human skeletal muscle proteome found after long-term endurance training but not after strength training. iScience, 27(1).
[47]
Akbaba, Y., Kaci, F. N., Arslan, M. E., Goksu, S., Mardinoglu, A. & Turkez, H. (2024). Novel tetrahydronaphthalen-1-yl-phenethyl ureas : synthesis and dual antibacterial-anticancer activities. Journal of enzyme inhibition and medicinal chemistry (Print), 39(1).
[48]
Barde, S., Aguila, J., Zhong, W., Solarz, A., Mei, I., Prud'homme, J. ... Hokfelt, T. (2024). Substance P, NPY, CCK and their receptors in five brain regions in major depressive disorder with transcriptomic analysis of locus coeruleus neurons. European Neuropsychopharmacology, 78, 54-63.
[49]
Hudson, E. P. (2024). The Calvin Benson cycle in bacteria : New insights from systems biology. Seminars in Cell and Developmental Biology, 155, 71-83.
[50]
Hansen, J. N. (2024). Morphometric Analyses of Macrophages. In Tissue-Resident Macrophages: Methods and Protocols (pp. 519-541). Springer Nature.