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Publications

[1]
H. J. Kim et al., "A comprehensive multiomics atlas of treatment-naïve breast cancer uncovers co-occurring tumor-immune ecosystems driving immune hot and cold phenotypes," in AACR Annual Meeting, APR 17-22, 2026, San Diego, CA, 2026.
[2]
A. Tornberg Engbrink, "A Flexible Reference-Based Framework for Spatial Differential Occurrence Analysis," , 2026.
[3]
J. Mínguez-Martínez et al., "A signal-responsive cooperative transcription factor network determines alveolar macrophage identity," Journal of Experimental Medicine, vol. 223, no. 7, 2026.
[4]
M. Yaici, "A Synthetic Biology Platform for Engineering Sequential Lineage Bifurcations in Cells," , 2026.
[5]
M. He et al., "Abstract PR013 : Comprehensive spatial profiling of prostate cancer metastasis: Mapping clonal evolution, microenvironment dynamics, and early metastatic markers," Cancer Research, vol. 86, pp. PR13-PR13, 2026.
[6]
E. G. Villacampa, "Advancing Spatial Transcriptomics : From Method Development to Biological Insights," Doctoral thesis : KTH Royal Institute of Technology, TRITA-CBH-FOU, 2026:4, 2026.
[7]
O. A. Andreassen et al., "An AI-Health infrastructure for the Nordic region: technical foundations, data assets, and a roadmap for deployment," Nature Medicine, 2026.
[8]
H. Schagerlund, "Analysis of Antibiotic Effects on Bacterial Growth Dynamics in Infection Models," , 2026.
[9]
E. Marmol-Sanchez et al., "Ancient RNA expression profiles from the extinct woolly mammoth," Cell, vol. 189, no. 1, 2026.
[10]
J. Nyman, "Assembling a Spatial Transcriptomics Atlas of Immune Niches in the Human Gut," , 2026.
[11]
Z. Haider et al., "Baseline plasma-informed circulating tumor DNA analyses comparing multiplex digital PCR and NGS for longitudinal monitoring in Hodgkin lymphoma," Blood Cancer Journal, vol. 16, no. 1, 2026.
[12]
L. Squires et al., "Better Inputs, Better Learning: A Peptide Embedding Tutorial for Proteomic Mass Spectrometry," Journal of Proteome Research, vol. 25, no. 2, pp. 1160-1165, 2026.
[13]
A. Torstensson et al., "Comparing DNA metabarcoding with light microscopy to identify eukaryotic phytoplankton in the Baltic Sea, Kattegat and Skagerrak," Scientific Reports, vol. 16, no. 1, 2026.
[14]
D. Boers et al., "Comparing the performance of functional versus taxonomic metagenomics for detecting ammonia disturbances in the biogas system," FEMS Microbiology Ecology, vol. 102, no. 5, 2026.
[15]
E. Berg, "Computational analysis and comparison of single-cell resolved protein maps of human lymphoid organs," , 2026.
[16]
D. Fernandez Bonet et al., "Computational protocol to assess the quality of sequencing-based microscopy networks using spatial coherence metrics," STAR Protocols, vol. 7, no. 2, 2026.
[17]
E. Osipova et al., "Convergent and lineage-specific genomic changes shape adaptations in sugar-consuming birds," Science, vol. 391, no. 6788, 2026.
[18]
J. Jalkanen et al., "Cytoarchitectural multi-depot profiling reveals immune-metabolic crosstalk in human colon-associated adipose tissue," Cell Metabolism, vol. 38, no. 2, pp. 419-433.e9, 2026.
[19]
S. Storari, "Development of Affinity Ligands Towards ɑHelper Fusion Protein," , 2026.
[20]
E. Zangene et al., "DORSSAA: Drug-Target interactOmics Resource Based on Stability/Solubility Alteration Assay," Molecular & Cellular Proteomics, vol. 25, no. 7, 2026.
[21]
I. Georgopoulos et al., "Environmental factors rather than genetics likely drive vitamin D deficiency in idiopathic scoliosis," The spine journal, vol. 26, no. 9, pp. 1843-1851, 2026.
[22]
S. Koplev et al., "Epigenetic modulation of stromal cell states underpins pathological tissue niches in Crohn’s disease," Nature Immunology, vol. 27, no. 9, pp. 1954-1968, 2026.
[23]
M. Höglund, "Establishing a high-throughput-compatible workflow for on-chip generation, imaging, and characterisation of heterotypic tumor spheroids," , 2026.
[24]
L. Dahl et al., "Exploration of immune phenotypes in self-sampling citizens," iScience, vol. 29, no. 2, 2026.
[25]
M. Saez Carazo, "Exploratory single-cell workflow development and analysis of retinal degeneration in support of MP-004 studies," , 2026.
[26]
T. Cheng et al., "Fetal Pathogenesis of Scoliosis Suggested by Asymmetry of Gene Expression in Paravertebral Muscles," JOR Spine, vol. 9, no. 3, 2026.
[27]
A. Rabenius, "From Trigger to Transition : Transcriptional Responses in Cell-State Transitions," Doctoral thesis Stockholm : KTH Royal Institute of Technology, TRITA-CBH-FOU, 2026:25, 2026.
[28]
D. P.R. Herlemann et al., "Generalist phyllosphere taxa dominate microbial communities on macrophytes across a natural salinity gradient," Environmental Microbiome, vol. 21, no. 1, 2026.
[29]
A. Edsjo et al., "Genomic Medicine Sweden : Advancing precision medicine at the national level," Journal of Internal Medicine, 2026.
[30]
K. Garefelt et al., "High throughput in situ imaging reveals widely occurring diel vertical migration among phytoplankton," ISME Communications, vol. 6, no. 1, 2026.
[31]
E. Rickardsson, "High-Throughput Transcriptome Profiling of Single Extracellular Vesicles Using Droplet Barcode Sequencing," , 2026.
[32]
M. Avijgan et al., "Human growth plates house resting zone sub-populations with features of quiescent stem cells," Bone Research, vol. 14, no. 1, 2026.
[33]
D. Fernandez Bonet, "Imaging with Interactions : Spatial Reconstruction of DNA Barcode Networks," Doctoral thesis Stockholm : KTH Royal Institute of Technology, TRITA-CBH-FOU, 2026:38, 2026.
[34]
L. Chihai, "Inferred Clonal Copy Number Variation in Spatially Resolved Breast Cancer," , 2026.
[35]
M. Tardaguila et al., "Integrating natural and engineered genetic variations to decode regulatory influence on blood traits," Cell Reports, vol. 45, no. 2, pp. 116937, 2026.
[36]
A. Xuan, "Interference of Therapeutic Antibodies with Olink Assays," , 2026.
[37]
K. Krishnakumar et al., "Intrinsically disordered conserved motifs of c-MYC encode selective protein interactions," Biophysical Journal, vol. 125, no. 4, pp. 53a-53a, 2026.
[38]
A. Nilsson, "Learning Representations for Tandem Mass Spectra : Self-Supervised Methods and Inductive Biases," Licentiate thesis Stockholm : KTH Royal Institute of Technology, TRITA-CBH-FOU, 2026:21, 2026.
[39]
M. Ek et al., "Long-read genome sequencing enhances diagnostics of pediatric neurological disorders," Genome Medicine, vol. 18, no. 1, 2026.
[40]
Y. Zhou (周奕岑) et al., "MoRNiNG : A Database of RNA Modification Sites Associated with RNA Secondary Structure Dynamics," Genomics, proteomics & bioinformatics, vol. 24, no. 2, 2026.
[41]
S. Lang, "Network-Based DNA Data Storage," Doctoral thesis Stockholm : KTH Royal Institute of Technology, TRITA-CBH-FOU, 2026:34, 2026.
[42]
J. Domingo et al., "Nonlinear transcriptional responses to gradual modulation of transcription factor dosage," eLIFE, vol. 13, 2026.
[43]
L. Hedlund, "Optimisation of a Multiparameter Spectral Flow Cytometry Panel for Immune Profiling in Gender-Affirming Hormone Therapy," , 2026.
[44]
A. Söderman, "Optimization of a Scalable High-Throughput Droplet-Based Barcoding Method for Single-Nucleus RNA Sequencing," , 2026.
[45]
A. Chen et al., "Paralog-aware assembly and filtering strategies reveal minimal nucleotide variation on the macro germline-restricted chromosome of the zebra finch," Heredity, 2026.
[46]
A. Buckenmeyer et al., "Patterns of Conservation and Loss of Hox Genes in Xenacoelomorph Lineage Since Divergence From Last Common Bilaterian Ancestor," Genome Biology and Evolution, vol. 18, no. 4, 2026.
[47]
L. F. Delgado et al., "Phylogeny-aware comparative genomics of Vibrio vulnificus links genetic traits to pathogenicity," mBio, vol. 17, no. 7, pp. 1-18, 2026.
[48]
L. Al-Hanbali, "Plasma Proteins Associated with Disease Pathology in Amyotrophic Lateral Sclerosis (ALS)," , 2026.
[49]
S. Rouot et al., "ProbeST : a custom probe design pipeline for dual host–pathogen Spatial Transcriptomics," BMC Genomics, vol. 27, no. 1, 2026.
[50]
G. Al-Eryani et al., "Proteotranscriptomic dissection of breast cancer T cell states identifies CD103+Tfh-derived cytotoxic CD4+cells linked to immunotherapy response," Cancer Research, vol. 86, no. 7, 2026.