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Publications

[1]
X. Luo et al., "A Comprehensive Evaluation of Consensus Spectrum Generation Methods in Proteomics," Journal of Proteome Research, vol. 21, no. 6, pp. 1566-1574, 2022.
[2]
E. Bell et al., "Active anaerobic methane oxidation and sulfur disproportionation in the deep terrestrial subsurface," The ISME Journal, vol. 16, no. 6, pp. 1583-1593, 2022.
[4]
M. Banijamali et al., "Characterizing single extracellular vesicles by droplet barcode sequencing for protein analysis," Journal of Extracellular Vesicles, vol. 11, no. 11, 2022.
[5]
M. Ratz et al., "Clonal relations in the mouse brain revealed by single-cell and spatial transcriptomics," Nature Neuroscience, vol. 25, no. 3, pp. 285-294, 2022.
[6]
A. Andersson, "Computational methods for analysis of spatial transcriptomics data : An exploration of the spatial gene expression landscape," Doctoral thesis Stockholm : Kungliga Tekniska högskolan, TRITA-CBH-FOU, 2022:11, 2022.
[7]
L. Stenbeck, "Deconvolution of Spatial Gene Expression in Cancer," Doctoral thesis : KTH Royal Institute of Technology, TRITA-CBH-FOU, 2022:20, 2022.
[8]
L. Stenbeck, F. Taborsak-Lines and S. Giacomello, "Enabling automated and reproducible spatially resolved transcriptomics at scale," Heliyon, vol. 8, no. 6, pp. e09651, 2022.
[9]
L. F. Delgado and A. F. Andersson, "Evaluating metagenomic assembly approaches for biome-specific gene catalogues," Microbiome, vol. 10, no. 1, 2022.
[10]
K. Thrane, "Exploring Biological Systems using Spatial Transcriptomic Technologies," Doctoral thesis Stockholm, Sweden : KTH Royal Institute of Technology, TRITA-CBH-FOU, 2022:27, 2022.
[11]
E. D. Flynn and T. Lappalainen, "Functional Characterization of Genetic Variant Effects on Expression," Annual Review of Biomedical Data Science, vol. 5, pp. 119-139, 2022.
[13]
T. Cheng et al., "Idiopathic scoliosis : a systematic review and meta-analysis of heritability," EFORT OPEN REVIEWS, vol. 7, no. 6, pp. 414-421, 2022.
[16]
M. Palmblad et al., "Interpretation of the DOME Recommendations for Machine Learning in Proteomics and Metabolomics," Journal of Proteome Research, vol. 21, no. 4, pp. 1204-1207, 2022.
[17]
L. Pena-Perez et al., "Linked-read whole-genome sequencing resolves common and private structural variants in multiple myeloma," BLOOD ADVANCES, vol. 6, no. 17, pp. 5009-5023, 2022.
[21]
S. Niu et al., "p The Chinese pine genome and methylome unveil key features of conifer evolution," Cell, vol. 185, no. 1, pp. 204-+, 2022.
[22]
G. Stolf Jeuken, "Pathway analysis: methods and perspectives," Doctoral thesis Stockholm, Sweden : KTH Royal Institute of Technology, TRITA-CBH-FOU, 2022:41, 2022.
[23]
M. Ekvall et al., "Prosit Transformer : A transformer for Prediction of MS2 Spectrum Intensities," Journal of Proteome Research, vol. 21, no. 5, pp. 1359-1364, 2022.
[24]
D. L. Plubell et al., "Putting Humpty Dumpty Back Together Again : What Does Protein Quantification Mean in Bottom-Up Proteomics? br," Journal of Proteome Research, vol. 21, no. 4, pp. 891-898, 2022.
[25]
A. Rabenius et al., "Quantifying RNA synthesis at rate-limiting steps of transcription using nascent RNA-sequencing data," STAR Protocols, vol. 3, no. 1, pp. 101036, 2022.
[26]
[27]
S. Vickovic et al., "SM-Omics is an automated platform for high-throughput spatial multi-omics," Nature Communications, vol. 13, no. 1, 2022.
[29]
B. Lötstedt, "Spatial mapping of bacteria and transcriptomes," Doctoral thesis : Universitetsservice US-AB, TRITA-CBH-FOU, 2022:18, 2022.
[30]
M. Marklund, "Spatial transcriptome and epigenome analysis with focus on prostate cancer," Doctoral thesis Stockholm : Kungliga Tekniska högskolan, TRITA-CBH-FOU, 2022:63, 2022.
[31]
L. Larsson et al., "Spatial transcriptomics," Cell, vol. 185, no. 15, pp. 2840-2840.e1, 2022.
[32]
A. Erickson et al., "Spatially resolved clonal copy number alterations in benign and malignant tissue," Nature, vol. 608, no. 7922, pp. 360-+, 2022.
[33]
J. Lundeberg, "Spatially resolved gene expression," European Journal of Human Genetics, vol. 30, no. SUPPL 1, pp. 7-7, 2022.
[35]
L. Bergenstråhle et al., "Super-resolved spatial transcriptomics by deep data fusion," Nature Biotechnology, vol. 40, no. 4, pp. 476-479, 2022.
[36]
G. S. Jeuken, N. P. Tobin and L. Käll, "Survival analysis of pathway activity as a prognostic determinant in breast cancer," PloS Computational Biology, vol. 18, no. 3, 2022.
[37]
A. Zhigulev et al., "The Role Of Rare Enhancer Variants In Bicuspid Aortic Valve Pathology," Atherosclerosis, vol. 355, pp. E68-E69, 2022.
[38]
A. M. Erickson et al., "The spatial landscape of clonal somatic mutations in benign and malignant prostate epithelia," European Urology, vol. 81, pp. S725-S726, 2022.
[39]
S. M. Parigi et al., "The spatial transcriptomic landscape of the healing mouse intestine following damage," Nature Communications, vol. 13, no. 1, 2022.
[41]
E. D. Flynn et al., "Transcription factor regulation of eQTL activity across individuals and tissues," PLOS Genetics, vol. 18, no. 1, pp. e1009719, 2022.
[42]
D. A. Glinos et al., "Transcriptome variation in human tissues revealed by long-read sequencing," Nature, vol. 608, no. 7922, pp. 353-359, 2022.
[43]
L. Delemotte et al., "Uniting diversity to create a more inclusive academic environment," Journal of Cell Science, vol. 135, no. 7, 2022.
[44]
[45]
S. Giacomello, "A new era for plant science : spatial single-cell transcriptomics," Current opinion in plant biology, vol. 60, 2021.
[46]
M. Haniffa, J. Lundeberg and S. Webb, "A roadmap for the Human Developmental Cell Atlas," Nature, vol. 597, no. 7875, pp. 196-205, 2021.
[47]
S. Z. Wu et al., "A single-cell and spatially resolved atlas of human breast cancers," Nature Genetics, vol. 53, no. 9, pp. 1334-+, 2021.
[48]
S. Z. Wu et al., "An integrated multi-omic cellular atlas of human breast cancers.," Cancer Research, vol. 81, no. 13, 2021.
[50]
K. Piwosz et al., "CARD-FISH in the Sequencing Era : Opening a New Universe of Protistan Ecology," Frontiers in Microbiology, vol. 12, 2021.
Page responsible:Ludvig Larsson
Belongs to: Department of Gene Technology
Last changed: Feb 27, 2018