Publications
2024
60. Mishra A, Kim HS, Kumar R, Srivastava V* (2024) Advances in Vibrio-Related Infection Management: An Integrated Technology Approach for Aquaculture and Human Health. Accepted in Critical Reviews in Biotechnology
59. Kao MR, Parker J, Oehme D, Chang SC, Cheng LC, Wang D, Srivastava V, Wagner JM, Harris PJ, and Hsieh YSY. (2024) Substrate Specificities of Variants of Barley (1,3)- and (1,3;1,4)-β-d-Glucanases Resulting from Mutagenesis and Segment Hybridization. Biochemistry doi: 10.1021/acs.biochem.3c00673
2023
58. Kumari P, Deepa N, Trivedi PK, Singh BK, Srivastava V*, & Singh A* (2023) Plants and endophytes interaction: a “secret wedlock” for sustainable biosynthesis of pharmaceutically important secondary metabolites. Microb Cell Fact 22, 226 (2023). https://doi.org/10.1186/s12934-023-02234-8
57. Arora S, Satija S, Mittal A, Solanki S, Mohanty SK, Srivastava V, Sengupta D, Rout D, Murugan NA, Borkar RM, Ahuja, G (2023). Unlocking the mysteries of DNA adducts with artificial intelligence. Accepted in ChemBioChem, e202300577.
56. de Oliveira AS, de Oliveira JS, Kumar R, Silva FBA, Fernandes MR, Nobre FD, Costa ADC, Albuquerque P, Sidrim JJC, Rocha MFG, Santos FA, Srivastava V, Romeiro LAS, & Brilhante RSN (2023). Antifungal activity of sustainable histone deacetylase inhibitors against planktonic cells and biofilms of Candida spp. and Cryptococcusneoformans. Medical mycology, 61(8), myad073. https://doi.org/10.1093/mmy/myad073
55. Kumar R, Meghwanshi GK, Marcianò D, Ullah SF, Bulone V, Toffolatti SL, Srivastava V * (2023) Sequence, structure and functionality of pectin methylesterases and their use in sustainable carbohydrate bioproducts: A review. International Journal of Biological Macromolecules doi.org/10.1016/j.ijbiomac.2023.125385
54. Li H, Hao M, Kvammen A, Inman AR, Srivastava V, Bulone V, McKee LS (2023) Family 92 carbohydrate-binding modules specific for β-1,6-glucans increase the thermostability of a bacterial chitinase. Biochimie 212 (2023) 153-160.
53. Rocafort M, Srivastava V, Bowen J, Moreno SD, Guo Y, Bulone V, Plummer K, Sutherland P, Anderson M, Bradshaw R, Mesarich C (2023) Cell wall carbohydrate dynamics during the differentiation of infection structures by the apple scab fungus, Venturia inaequalis. Microbiology Spectrum, doi.org/10.1128/spectrum.04219-22
52. Chen XR*, Wang Y*, Kale S, Fang YF*, Srivastava V* (2023) Editorial: Apoplastic Effectors ― What Roles Do They Play In Plant-Pathogen. Front. Microbiol. 14, doi: 10.3389/fmicb.2023.1149771
51. Srivastava A, Kumar A, Biswas S, Srivastava V, Rajaram H, Mishra Y (2023) Cd-induced cytosolic proteome changes in the cyanobacterium Anabaena sp. PCC7120 are mediated by LexA as one of the regulatory proteins. BBA-Proteins and Proteomics 1871, 140902
2022
50. Kumar R, Kumar S, Bulone V, Srivastava V* (2022) Biochemical Characterization and Molecular Insights into Substrate Recognition of Pectin Methylesterase from Phytophthora Infestans. Computational and Structural Biotechnology Journal 20, 6023-6032
49. Meghwanshia GK, Verma S, Srivastava V, Kumar R (2022) Archaeal lipolytic enzymes: Current developments and further prospects. Biotechnology Advances 61, 108054
48. Srivastava A, Kumar A, Biswas S, Kumar R, Srivastava V, Rajaram H, Mishra Y (2022) Gamma (g)-radiation stress response of the cyanobacterium Anabaena sp. PCC7120: Regulatory role of LexA and photophysiological changes. Plant Science 326, 111529
47. Murugan NA, Javali PS, Jeyarajpandian C, Ali MA, Srivastava V and Jeyaraman J (2022) Computational Investigation of Increased Virulence and Pathogenesis of SARS-CoV-2 Lineage B.1.1.7. Phys. Chem. Chem. Phys., https://doi.org/10.1039/D2CP00469K
46. Shen D*, Wang Y*, Chen X*, Srivastava V* and Toolatti SL* (2022) Editorial: Advances in multi-omics study of filamentous plant pathogens. Front. Microbiol. 13:998501. doi: 10.3389/fmicb.2022.998
45. Mishra A, Patra S, Srivastava V, Uzun L, Mishra YM, Syväjärvi M, Tiwari A (2022)
Progress in paper-based analytical devices for climate neutral biosensing. Biosensors and Bioelectronics: X, 11: 100166. https://doi.org/10.1016/j.biosx.2022.100166.
44. Kumar R, Murugan NA*, Srivastava V* (2022) Improved Binding Affinity of Omicron’s Spike Protein for the Human Angiotensin-Converting Enzyme 2 Receptor Is the Key behind Its Increased Virulence. International Journal of Molecular Sciences. 23(6):3409. https://doi.org/10.3390/ijms23063409
43. Srivastava A, Kumar A, Biswas S, Srivastava V, Rajaram H & Mishra Y (2022)
Regulatory role of LexA in modulating photosynthetic redox poise and cadmium stress tolerance in the cyanobacterium, Anabaena sp. PCC7120. Environmental and Experimental Botany, 195, 104790, https://doi.org/10.1016/j.envexpbot.2022.104790.
2021
42. Marczynski M, Jiang K, Blakeley M, Srivastava V, Vilaplana F, Crouzier T & Lieleg O (2021) Structural Alterations of Mucins Are Associated with Losses in Functionality. Biomacromolecules, doi.org/10.1021/acs.biomac.1c00073
41. Li J, Wang D, Chang SC, Liang PH, Srivastava V, Guu SY, Shie JJ, Khoo KH, Bulone V & Hsieh YSY (2021) Production of Structurally Defined Chito-Oligosaccharides with a Single N-Acetylation at Their Reducing End Using a Newly Discovered Chitinase from Paenibacillus pabuli. J. Agric. Food Chem. doi.org/10.1021/acs.jafc.0c06804
40. Srivastava A, Biswas S, Yadav S, Kumar S, Srivastava V & Mishra Y (2021) Acute cadmium toxicity and post-stress recovery: Insights into coordinated and integrated response/recovery strategies of Anabaena sp. PCC 7120. Journal of Hazardous Materials 411, 124822
39. Srivastava A, Biswas S, Yadav S, Kumar A, Rajaram H, Srivastava V*, & Mishra Y* (2021) Physiological and thylakoid proteome analyses of Anabaena sp. PCC 7120 for monitoring the photosynthetic responses under cadmium stress. Algal Research 54, 102225
2020
38. Murugan NA*, Kumar S, Jeyakanthan J, & Srivastava V* (2020) Searching for target-specific and multi-targeting organics for Covid-19 in the Drugbank database with a double scoring approach. Scientific Reports 10, 19125.
37. Kumar S, Mandal RS, Bulone V & Srivastava V* (2020) Identification of growth inhibitors of the fish pathogen Saprolegnia parasitica using in silico subtractive proteomics, computational modelling, and biochemical validation. Front. Microbiol. 11:571093. doi: 10.3389/fmicb.2020.571093
36. Pang Z, McKee LS, Srivastava V, Klinter S, Diaz-Moreno SM, Orlean P, Liu X & Bulone V (2020) Analysis of a cellulose synthase catalytic subunit from the oomycete pathogen of crops Phytophthora capsici. Cellulose https://doi.org/10.1007/s10570-020-03362-9
35. Gallo V, Srivastava V, Bulone V, Zappettini A, Villani M, Marmiroli N, Marmiroli M (2020) Proteomic analysis identifies markers of exposure to cadmium sulphide quantum dots (CdS QDs). Nanomaterials, 10 (6), 121
34. Schönbichler AS, Díaz-Moreno SM, Srivastava V, McKee LS (2020) Exploring the potential for fungal antagonism and cell wall attack by Bacillus subtilis natto. Frontiers in Microbiology 11, 521
33. Yadav S, Srivastava A, Biswas S, Chaurasia N, Singh SK, Kumar S, Srivastava V* & Mishra Y* (2020) Comparison and optimization of protein extraction and two-dimensional gel electrophoresis protocols for liverworts. BMC Res Notes 13, 60 doi.org/10.1186/s13104-020-4929-1
2019
32. Pham TAT, Schwerdt JG, Shirleya NJ, Xing X, Hsieh YSY, Srivastava V, Bulone V, Little A (2019) Analysis of cell wall synthesis and metabolism during early germination of Blumeria graminis f. sp. hordei conidial cells induced in vitro. The Cell Surface doi.org/10.1016/j.tcsw.2019.100030
31. Kaur S, Srivastava A, Kumar S, Srivastava V, Ahluwalia AS, Mishra Y (2019) Biochemical and proteomic analysis reveals oxidative stress tolerance strategies of Scenedesmus abundans against allelochemicals released by Microcystis aeruginosa. Algal Research doi.org/10.1016/j.algal.2019.101525
30. Dong Y, Sanford RA, Inskeep WP, Srivastava V et al. Fouke BW (2019) Physiology, Metabolism and Fossilization of Hot-Spring Filamentous Microbial Mats. Astrobiology doi.org/10.1089/ast.2018.1965
29. Kumar S, Bulone V and Srivastava V (2019) Controlling Saprolegnia Infections For A Sustainable Aquaculture (*Popular science article). ScienceTrends
2018
28. Leijon F, Melzer M, Zhou Q, Srivastava V* and Bulone V* (2018) Proteomic analysis of plasmodesmata from Populus cell suspension cultures in relation with callose biosynthesis. (*Corresponding) Front. Plant Sci. doi: 10.3389/fpls.2018.01681
27. Wang D, Li Jing, Salazar-Alvarez German, McKee L, Srivastava V, Sellberg J, Bulone V, Hsieh Y (2018) Production of Functionalised Chitins Assisted by Fungal Lytic Polysaccharide Monooxygenase. Green Chemistry DOI: 10.1039/C8GC00422F
26. Kootala S, Filho L, Srivastava V, Linderberg V, Moussa A, David L, Trombotto S, and Crouzier T (2018) Reinforcing mucus barrier properties with low molar mass chitosans. Biomacromolecules, DOI: 10.1021/acs.biomac.7b01670
25. Wang D, Aarstad O, Li Jing, McKee L, Sætrom G, Vyas A, Srivastava V, Aachmann F, Bulone V and Hsieh Y (2018) Preparation of 4-deoxy-L-erythro-5-hexoseulose uronic acid (DEH) and guluronic acid-rich alginate using a unique exo-alginate lyase from Thalassotalea crassostreae. J. Agric. Food Chem. doi: 10.1021/acs.jafc.7b05751
24. Srivastava V*, Rezinciuc S and Bulone V* (2018) Quantitative Proteomic Analysis of Four Developmental Stages of Saprolegnia parasitica. (*Corresponding) Front. Microbiol. 8:2658. doi: 10.3389/fmicb.2017.02658
2017
23. Käsdorf B, Weber F, Petrou G, Srivastava V, Crouzier T, Lieleg O (2017) Mucin-inspired lubrication on hydrophobic surfaces. Biomacromolecules. doi: 10.1021/acs.biomac.7b00605
22. Bygdell J, Srivastava V, Obudulu O, Srivastava MK, Nilsson R, Sundberg B, Trygg J, Mellerowicz E & Wingsle G (2017) Protein Expression in Developing Tension Wood in Populus, Monitored at High Tissue Resolution. Journal of Experimental Botany doi.org/10.1093/jxb/erx186
21. Srivastava V, McKee LS & Bulone V (2017) Plant Cell Walls (Version 3.0) In: Nature Encyclopedia of Life Sciences. Nature Publishing Group, London, http://www.els.net/. DOI: 10.1002/9780470015902.a0001682.pub3
20. Dahlin P, Srivastava V, Ekengren S, McKee LS & Bulone V (2017) Comparative analysis of sterol acquisition in the oomycetes Saprolegnia parasitica and Phytophthora infestans. PLoS ONE 12: e0170873. doi:10.1371/journal.pone.0170873
19. Pang Z, Srivastava V, Liu X & Bulone V (2017) Quantitative proteomics links metabolic pathways to specific developmental stages of the plant pathogenic oomycete Phytophthora capsici. Mol Plant Pathol, 18: 378–390.
2016
18. Dahlin P, Srivastava V, Bulone V & McKee LS (2016) The Oxidosqualene Cyclase from the Oomycete Saprolegnia Parasitica Synthesizes Lanosterol as a Single Product. Front. Microbiol. 7:1802
17. Ford KL, Chin T, Srivastava V, Zeng W, Doblin MS, Bulone V & Bacic A (2016) Comparative Golgi proteome study of Lolium multiflorum and Populus trichocarpa. Proteomes 4(3), 23.
16. Brown C, Szpryngiel S, Kuang G, Srivastava V, Ye W, McKee LS, Tu Y, Mäler L & Bulone V (2016) Structural and functional characterization of the Microtubule Interacting and Trafficking (MIT) domains of two oomycete chitin synthases. The FEBS Journal, doi: 10.1111/febs.13794.
15. Srivastava V*, Weber JR, Malm E, Fouke BW & Bulone V* (2016) Proteomic analysis of a poplar cell suspension culture suggests a major role of protein S-acylation in diverse cellular processes. (*Corresponding). Front. Plant Sci. 7:477
14. Dimitroff G, Little A, Lahnstein J, Schwerdt JG, Srivastava V, Bulone V, Burton RA & Fincher GB (2016) (1,3;1,4)-β-Glucan biosynthesis by the CSLF6 enzyme: position and flexibility of catalytic residues influence product fine structure. Biochemistry 55, 2054–2061
2014
13. Malm E, Srivastava V Sundquist G & Bulone V. (2014) APP: an Automated Proteomics Pipeline 555 for the analysis of mass spectrometry data based on multiple open access tools. BMC Bioinformatics 16, 441
12. Pavankumar AR, Kayathri R, Murugan NA, Zhang Q, Srivastava V, Okoli C, Bulone V, Rajarao GK & Ågren H. (2014) Dimerization of a flocculent protein from Moringa oleifera: experimental evidence &in silico interpretation. Journal of Biomolecular Structure & Dynamics 32, 406-415
2013
11. Srivastava V, Obudulu O, Bygdell J, Löfstedt T, Rydén P, Nilsson R, Ahnlund M, Johansson A, Jonsson P, Freyhult E, Qvarnström J, Karlsson J, Melzer M, Moritz T, Trygg J, Hvidsten TR & Wingsle G. (2013) OnPLS integration of transcriptomic, proteomic &metabolomic data reveals multi-level oxidative stress responses in the cambium of transgenic hipI- superoxide dismutase Populus plants. BMC Genomics 14, 893-907
10. Srivastava V, Malm E, Sundqvist G & Bulone V. (2013) Quantitative Proteomics Reveals that Plasma Membrane Microdomains from Poplar Cell Suspension Cultures are Enriched in Markers of Signal Transduction, Molecular Transport & Callose Biosynthesis. Molecular & Cellular Proteomics 12, 3874-3885
2012
9. Shaikhali J, Barajas-Lopéz J, Ötvös K, Kremnev D, Sánchez Garcia A, Srivastava V, Wingsle G, Bako L & Strand Å. (2012) The CRYPTOCHROME1-dependent response to excess light is mediated through the transcriptional activators ZINC FINGER PROTEIN EXPRESSED IN INFLORESCENCE MERISTEM LIKE1 & 2 in Arabidopsis thaliana. Plant Cell 24, 3009-3025
8. Shaikhali J, Normen L, de Dios Barajas-Lopez J, Srivastava V, Konig J, Sauer U, Winglse G, Karl-Josef Dietz & Strand Å. (2012) Redox-mediated mechanisms regulate DNA-binding activity of the G- group of bZIP transcription factors in Arabidopsis. Journal of Biological Chemistry 287, 27510-27525
7. Selles B, Hugo M, Trujillo M, Srivastava V, Wingsle G, Jacquot JP, Radi R & Rouhier N. (2012) Hydroperoxide & peroxynitrite reductase activity of poplar thioredoxin dependent glutathione peroxidase 5 : kinetics, catalytic mechanism & oxidative inactivation. Biochemical Journal 442, 369-380
2010-2011
6. Ekström JO, Habayeb MS, Srivastava V, Keiselbach T, Wingsle G & Hultmark D. (2011) Drosophila Nora virus capsid proteins differ from those of other picorna-like viruses. Virus Research 160, 51–58
5. Bergemalm D, Forsberg K, Srivastava V, Wingsle G & Marklund S. (2010). Superoxide dismutase-1 & other proteins in inclusions from transgenic amyotrophic lateral sclerosis model mice. Journal of Neurochemistry 114, 408-418
2009
4. Srivastava V, Srivastava MK, Chibani K, Nilsson R, Nicolas R, Melzer M & Wingsle G. (2009) Alternative splicing studies of reactive oxygen species gene network in Populus reveal two isoforms of high-isoelectric-point Superoxide Dismutase. Plant Physiology 149, 1848-1859
3. Bylesjö M, Nilsson R, Srivastava V, Grönlund A, Johansson AI, Jansson S, Karlsson J, Moritz M, Wingsle G & Trygg J. (2009) Integrated analysis of transcript, protein & metabolite data to study lignin biosynthesis in Hybrid Aspen. Journal of Proteome Research 8, 199-210
2. Yanamandra K, Alexeyev O, Zamotin V, Srivastava V, Shchukarev A, Brorsson AC, Tartaglia GG, Vogl T, Kayed R, Wingsle G, Olsson J, Dobson CM, Bergh A, Elgh F & Morozova-Rochet LA. (2009). Amyloid Formation by the Pro-Inflammatory S100A8/A9 Proteins in the Ageing Prostate. PLoS ONE 4, e5562
2007
1. Srivastava V, Schinkel H, Witzell J, Hertzberg M, Torp M, Srivastava MK, Karpinska B, Melzer M & Wingsle G. (2007) Down-regulation of high-isoelectric-point extracellular superoxide dismutase mediates alterations in the metabolism of reactive oxygen species &developmental disturbances in hybrid aspen. Plant Journal 49, 135-148
PhD Thesis
Srivastava V (2009) Active oxygen involvement in developmental processes in Populus.
