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Publications

2021

42. Marczynski M, Jiang K, Blakeley M, Srivastava V, Vilaplana F, Crouzier T & Lieleg O (2021) Structural Alterations of Mucins Are Associated with Losses in Functionality. Biomacromolecules, doi.org/10.1021/acs.biomac.1c00073

41. Li J, Wang D, Chang SC, Liang PH, Srivastava V, Guu SY,  Shie JJ,  Khoo KH, Bulone V  & Hsieh YSY (2021) Production of Structurally Defined Chito-Oligosaccharides with a Single N-Acetylation at Their Reducing End Using a Newly Discovered Chitinase from Paenibacillus pabuli.   J. Agric. Food Chem. doi.org/10.1021/acs.jafc.0c06804

40. Srivastava A, Biswas S, Yadav S, Kumar S, Srivastava V & Mishra Y (2021) Acute cadmium toxicity and post-stress recovery: Insights into coordinated and integrated response/recovery strategies of Anabaena sp. PCC 7120.  Journal of Hazardous Materials 411, 124822

39. Srivastava A, Biswas S, Yadav S, Kumar A, Rajaram H, Srivastava V*,  & Mishra Y* (2021) Physiological and thylakoid proteome analyses of Anabaena sp. PCC 7120 for monitoring the photosynthetic responses under cadmium stress. Algal Research 54, 102225

2020

38. Murugan NA*, Kumar S, Jeyakanthan J,  & Srivastava V* (2020)  Searching for target-specific and multi-targeting organics for Covid-19 in the Drugbank database with a double scoring approach. Scientific Reports 10, 19125. 

KTH Press Release

 

37. Kumar S, Mandal RS, Bulone V & Srivastava V* (2020) Identification of growth inhibitors of the fish pathogen Saprolegnia parasitica using in silico subtractive proteomics, computational modelling, and biochemical validation. Front. Microbiol. 11:571093. doi: 10.3389/fmicb.2020.571093

36. Pang Z, McKee LS, Srivastava V, Klinter S, Diaz-Moreno SM, Orlean P, Liu X & Bulone V (2020) Analysis of a cellulose synthase catalytic subunit from the oomycete pathogen of crops Phytophthora capsiciCellulose  https://doi.org/10.1007/s10570-020-03362-9

35. Gallo V, Srivastava V, Bulone V, Zappettini A, Villani M, Marmiroli N, Marmiroli M (2020) Proteomic analysis identifies markers of exposure to cadmium sulphide quantum dots (CdS QDs). Nanomaterials, 10 (6), 121

34. Schönbichler AS, Díaz-Moreno SM, Srivastava V, McKee LS (2020) Exploring the potential for fungal antagonism and cell wall attack by Bacillus subtilis natto. Frontiers in Microbiology 11, 521

33. Yadav S, Srivastava A, Biswas S, Chaurasia N, Singh SK, Kumar S, Srivastava V* & Mishra Y* (2020) Comparison and optimization of protein extraction and two-dimensional gel electrophoresis protocols for liverworts. BMC Res Notes 13, 60 doi.org/10.1186/s13104-020-4929-1

2019

32. Pham TAT, Schwerdt JG, Shirleya NJ, Xing X, Hsieh YSY, Srivastava V, Bulone V, Little A (2019) Analysis of cell wall synthesis and metabolism during early germination of Blumeria graminis f. sp. hordei conidial cells induced in vitro. The Cell Surface doi.org/10.1016/j.tcsw.2019.100030

31. Kaur S, Srivastava A, Kumar S, Srivastava V, Ahluwalia AS, Mishra Y (2019) Biochemical and proteomic analysis reveals oxidative stress tolerance strategies of Scenedesmus abundans against allelochemicals released by Microcystis aeruginosa. Algal Research doi.org/10.1016/j.algal.2019.101525

30. Dong Y, Sanford RA, Inskeep WP, Srivastava V et al. Fouke BW (2019) Physiology, Metabolism and Fossilization of Hot-Spring Filamentous Microbial Mats. Astrobiology doi.org/10.1089/ast.2018.1965

29.  Kumar S, Bulone V and Srivastava V (2019) Controlling Saprolegnia Infections For A Sustainable Aquaculture (*Popular science article). ScienceTrends

2018

28.  Leijon F, Melzer M, Zhou Q, Srivastava V* and Bulone V* (2018) Proteomic analysis of plasmodesmata from Populus cell suspension cultures in relation with callose biosynthesis. (*Corresponding) Front. Plant Sci. doi: 10.3389/fpls.2018.01681

27. Wang D, Li Jing, Salazar-Alvarez German, McKee L, Srivastava V, Sellberg J, Bulone V, Hsieh Y (2018) Production of Functionalised Chitins Assisted by Fungal Lytic Polysaccharide Monooxygenase.  Green Chemistry DOI: 10.1039/C8GC00422F

26. Kootala S, Filho L, Srivastava V, Linderberg V, Moussa A, David L, Trombotto S, and Crouzier T (2018) Reinforcing mucus barrier properties with low molar mass chitosans. Biomacromolecules, DOI: 10.1021/acs.biomac.7b01670

25. Wang D, Aarstad O, Li Jing, McKee L, Sætrom G, Vyas A, Srivastava V, Aachmann F, Bulone V and Hsieh Y (2018) Preparation of 4-deoxy-L-erythro-5-hexoseulose uronic acid (DEH) and guluronic acid-rich alginate using a unique exo-alginate lyase from Thalassotalea crassostreaeJ. Agric. Food Chem. doi: 10.1021/acs.jafc.7b05751

24. Srivastava V*, Rezinciuc S and Bulone V* (2018) Quantitative Proteomic Analysis of Four Developmental Stages of Saprolegnia parasitica. (*Corresponding) Front. Microbiol. 8:2658. doi: 10.3389/fmicb.2017.02658

2017

23. Käsdorf B, Weber F, Petrou G, Srivastava V, Crouzier T, Lieleg O (2017) Mucin-inspired lubrication on hydrophobic surfaces. Biomacromolecules. doi10.1021/acs.biomac.7b00605

22. Bygdell J, Srivastava V, Obudulu O, Srivastava MK, Nilsson R, Sundberg B, Trygg J, Mellerowicz E & Wingsle G (2017) Protein Expression in Developing Tension Wood in Populus, Monitored at High Tissue Resolution. Journal of Experimental Botany  doi.org/10.1093/jxb/erx186

21. Srivastava V, McKee LS & Bulone V (2017) Plant Cell Walls (Version 3.0) In: Nature Encyclopedia of Life Sciences. Nature Publishing Group, London, http://www.els.net/. DOI: 10.1002/9780470015902.a0001682.pub3

20. Dahlin P, Srivastava V, Ekengren S, McKee LS & Bulone V (2017) Comparative analysis of sterol acquisition in the oomycetes Saprolegnia parasitica and Phytophthora infestans. PLoS ONE 12: e0170873. doi:10.1371/journal.pone.0170873

19. Pang Z, Srivastava V, Liu X & Bulone V (2017) Quantitative proteomics links metabolic pathways to specific developmental stages of the plant pathogenic oomycete Phytophthora capsici. Mol Plant Pathol, 18: 378–390.

2016

18. Dahlin P, Srivastava V, Bulone V & McKee LS (2016) The Oxidosqualene Cyclase from the Oomycete Saprolegnia Parasitica Synthesizes Lanosterol as a Single Product. Front. Microbiol. 7:1802

17. Ford KL, Chin T, Srivastava V, Zeng W, Doblin MS, Bulone V & Bacic A (2016) Comparative Golgi proteome study of Lolium multiflorum and Populus trichocarpa. Proteomes 4(3), 23.

16. Brown C, Szpryngiel S, Kuang G, Srivastava V, Ye W, McKee LS, Tu Y, Mäler L & Bulone V (2016) Structural and functional characterization of the Microtubule Interacting and Trafficking (MIT) domains of two oomycete chitin synthases. The FEBS Journal, doi: 10.1111/febs.13794.

15. Srivastava V*, Weber JR, Malm E, Fouke BW & Bulone V* (2016) Proteomic analysis of a poplar cell suspension culture suggests a major role of protein S-acylation in diverse cellular processes. (*Corresponding). Front. Plant Sci. 7:477 

14. Dimitroff G, Little A, Lahnstein J, Schwerdt JG, Srivastava V, Bulone V, Burton RA & Fincher GB (2016) (1,3;1,4)-β-Glucan biosynthesis by the CSLF6 enzyme: position and flexibility of catalytic residues influence product fine structure. Biochemistry 55, 2054–2061

2014

13. Malm E, Srivastava V Sundquist G & Bulone V. (2014) APP: an Automated Proteomics Pipeline 555 for the analysis of mass spectrometry data based on multiple open access tools. BMC Bioinformatics 16, 441

12. Pavankumar AR, Kayathri R, Murugan NA, Zhang Q, Srivastava V, Okoli C, Bulone V, Rajarao GK & Ågren H. (2014) Dimerization of a flocculent protein from Moringa oleifera: experimental evidence &in silico interpretation. Journal of Biomolecular Structure & Dynamics 32, 406-415

2013

11. Srivastava V, Obudulu O, Bygdell J, Löfstedt T, Rydén P, Nilsson R, Ahnlund M, Johansson A, Jonsson P, Freyhult E, Qvarnström J, Karlsson J, Melzer M, Moritz T, Trygg J, Hvidsten TR & Wingsle G. (2013) OnPLS integration of transcriptomic, proteomic &metabolomic data reveals multi-level oxidative stress responses in the cambium of transgenic hipI- superoxide dismutase Populus plants. BMC Genomics 14, 893-907

10. Srivastava V, Malm E, Sundqvist G & Bulone V. (2013) Quantitative Proteomics Reveals that Plasma Membrane Microdomains from Poplar Cell Suspension Cultures are Enriched in Markers of Signal Transduction, Molecular Transport & Callose Biosynthesis. Molecular & Cellular Proteomics 12, 3874-3885

2012

9. Shaikhali J, Barajas-Lopéz J, Ötvös K, Kremnev D, Sánchez Garcia A, Srivastava V, Wingsle G, Bako L & Strand Å. (2012) The CRYPTOCHROME1-dependent response to excess light is mediated through the transcriptional activators ZINC FINGER PROTEIN EXPRESSED IN INFLORESCENCE MERISTEM LIKE1 & 2 in Arabidopsis thaliana. Plant Cell 24, 3009-3025

8. Shaikhali J, Normen L, de Dios Barajas-Lopez J, Srivastava V, Konig J, Sauer U, Winglse G, Karl-Josef Dietz & Strand Å. (2012) Redox-mediated mechanisms regulate DNA-binding activity of the G- group of bZIP transcription factors in Arabidopsis. Journal of Biological Chemistry 287, 27510-27525

7. Selles B, Hugo M, Trujillo M, Srivastava V, Wingsle G, Jacquot JP, Radi R & Rouhier N. (2012) Hydroperoxide & peroxynitrite reductase activity of poplar thioredoxin dependent glutathione peroxidase 5 : kinetics, catalytic mechanism & oxidative inactivation. Biochemical Journal 442, 369-380

 2010-2011

6. Ekström JO, Habayeb MS, Srivastava V, Keiselbach T, Wingsle G & Hultmark D. (2011) Drosophila Nora virus capsid proteins differ from those of other picorna-like viruses. Virus Research 160, 51–58

5. Bergemalm D, Forsberg K, Srivastava V, Wingsle G & Marklund S. (2010). Superoxide dismutase-1 & other proteins in inclusions from transgenic amyotrophic lateral sclerosis model mice. Journal of Neurochemistry 114, 408-418

2009

4. Srivastava V, Srivastava MK, Chibani K, Nilsson R, Nicolas R, Melzer M & Wingsle G. (2009) Alternative splicing studies of reactive oxygen species gene network in Populus reveal two isoforms of high-isoelectric-point Superoxide Dismutase. Plant Physiology 149, 1848-1859

3. Bylesjö M, Nilsson R, Srivastava V, Grönlund A, Johansson AI, Jansson S, Karlsson J, Moritz M, Wingsle G & Trygg J. (2009) Integrated analysis of transcript, protein & metabolite data to study lignin biosynthesis in Hybrid Aspen. Journal of Proteome Research 8, 199-210

2. Yanamandra K, Alexeyev O, Zamotin V, Srivastava V, Shchukarev A, Brorsson AC, Tartaglia GG, Vogl T, Kayed R, Wingsle G, Olsson J, Dobson CM, Bergh A, Elgh F & Morozova-Rochet LA. (2009). Amyloid Formation by the Pro-Inflammatory S100A8/A9 Proteins in the Ageing Prostate. PLoS ONE 4, e5562

2007

1. Srivastava V, Schinkel H, Witzell J, Hertzberg M, Torp M, Srivastava MK, Karpinska B, Melzer M & Wingsle G. (2007) Down-regulation of high-isoelectric-point extracellular superoxide dismutase mediates alterations in the metabolism of reactive oxygen species &developmental disturbances in hybrid aspen. Plant Journal 49, 135-148

PhD Thesis

Srivastava V (2009) Active oxygen involvement in developmental processes in Populus

 


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