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KLEEK aligned?
Science: Does the KLEEK motif line up?
Note: This assignment is connected to the motif filter assignment.
Determine whether the sequences are conserved enough around the KLEEK motif that its alignment is perfect: the motif sequences are lining up.
- Take the test file and retrieve the sequences that contain the KLEEK motif.
- Use the program muscle to compute a multialignment of the KLEEK sequences.
- Use the alignment viewer seaview to inspect the alignment. How well do the KLEEK motifs align?
To present:
- Explain the purpose of multialignment!
- Does the KLEEK motif line up in your multialignment?