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50 latest publications

Ahmed, M., Gustafsson, B., Aldi, S., Dusart, P., Egri, G., Butler, L. M. ... Caidahl, K. (2019). Molecular Imaging of a New Multimodal Microbubble for Adhesion Molecule Targeting. Cellular and Molecular Bioengineering, 12(1), 15-32.
Ibrahim, A., Hugerth, L. W., Hases, L., Saxena, A., Seifert, M., Thomas, Q. A. P. ... Williams, C. (2019). Colitis-induced colorectal cancer and intestinal epithelial estrogen receptor beta impact gut microbiota diversity. International Journal of Cancer, 144(12), 3086-3098.
Gonzalez-Granillo, M., Helguero, L. A., Alves, E., Archer, A., Savva, C., Pedrelli, M. ... Korach-Andre, M. (2019). Sex-specific lipid molecular signatures in obesity-associated metabolic dysfunctions revealed by lipidomic characterization in ob/ob mouse. Biology of Sex Differences, 10.
Ahmed, M., Baumgartner, R., Aldi, S., Dusart, P., Hedin, U., Gustafsson, B. & Caidahl, K. (2019). Human serum albumin-based probes for molecular targeting of macrophage scavenger receptors. International Journal of Nanomedicine, 14, 3723-3741.
Wang, J., Aydoğdu, E., Mukhopadhyay, S., Helguero, L. A. & Williams, C. (2019). A miR-206 regulated gene landscape enhances mammary epithelial differentiation. Journal of Cellular Physiology, 234(12), 22220-22233.
Lundberg, E. (2019). Dissecting the spatiotemporal subcellular distribution of the human proteome. European Journal of Human Genetics, 27, 764-764.
Dusart, P., Hallström, B. M., Renne, T., Odeberg, J., Uhlén, M. & Butler, L. M. (2019). A Systems-Based Map of Human Brain Cell-Type Enriched Genes and Malignancy-Associated Endothelial Changes. Cell reports, 29(6), 1690-+.
Lorenzo, H., Razzaq, M., Odeberg, J., Morange, P.-E., Saracco, J., Tregouet, D.-A., Thiebaut, R. (2019). High-dimensional multi-block analysis of factors associated with thrombin generation potential. In Proceedings 2019 IEEE 32ND INTERNATIONAL SYMPOSIUM ON COMPUTER-BASED MEDICAL SYSTEMS (CBMS). (pp. 453-458). IEEE.
Rykaczewska, U., Suur, B. E., Rohl, S., Razuvaev, A., Lengquist, M., Sabater-Lleal, M. ... Matic, L. (2020). PCSK6 Is a Key Protease in the Control of Smooth Muscle Cell Function in Vascular Remodeling. Circulation Research, 126(5), 571-585.
Perez, C. T., Ferraris, J., van Lunteren, J. A., Hellysaz, A., Iglesias, M. J. & Broberger, C. (2020). Adaptive Resetting of Tuberoinfundibular Dopamine (TIDA) Network Activity during Lactation in Mice. Journal of Neuroscience, 40(16), 3203-3216.
Hong, M.-G., Dodig-Crnkovic, T., Chen, X., Drobin, K., Lee, W., Wang, Y. ... Schwenk, J. M. (2020). Profiles of histidine-rich glycoprotein associate with age and risk of all-cause mortality. Life Science Alliance, 3(10), e202000817.
Hases, L., Archer, A., Indukuri, R., Birgersson, M., Savva, C., Korach-André, M. & Williams, C. (2020). High-fat diet and estrogen impacts the colon and its transcriptome in a sex-dependent manner. Scientific Reports, 10.
Hases, L., Indukuri, R., Birgersson, M., Nguyen-Vu, T., Lozano, R., Saxena, A. ... Williams, C. (2020). Intestinal estrogen receptor beta suppresses colon inflammation andtumorigenesis in both sexes. Cancer Letters, 492, 54-62.
Cheng, Y., Qu, X., Dong, Z., Zeng, Q., Ma, X., Jia, Y. ... Xia, W. (2020). Comparison of serum exosome isolation methods on co-precipitated free microRNAs. PeerJ, 8.
Hases, L. (2020). Estrogen signaling in colon inflammation and colorectal cancer (Doctoral thesis , Karolinska Institutet). Retrieved from
Stenström, L., Mahdessian, D., Gnann, C., Cesnik, A. J., Ouyang, W., Leonetti, M. D. ... Lundberg, E. (2020). Mapping the nucleolar proteome reveals a spatiotemporal organization related to intrinsic protein disorder. Molecular Systems Biology, 16(8).
Danielsson, F., Mahdessian, D., Axelsson, U., Sullivan, D. P., Uhlén, M., Andersen, J. S. ... Lundberg, E. (2020). Spatial Characterization of the Human Centrosome Proteome Opens Up New Horizons for a Small but Versatile Organelle. Proteomics.
Mahdessian, D., Cesnik, A. J., Gnann, C., Danielsson, F., Stenström, L., Arif, M. ... Lundberg, E. (2021). Spatiotemporal dissection of the cell cycle with single-cell proteogenomics. Nature, 590(7847).
Hases, L., Ibrahim, A., Chen, X., Liu, Y., Hartman, J. & Williams, C. (2021). The Importance of Sex in the Discovery of Colorectal Cancer Prognostic Biomarkers. International Journal of Molecular Sciences, 22(3).
Hases, L., Indukuri, R., Birgersson, M., Nguyen-Vu, T., Lozano, R., Saxena, A. ... Williams, C. (2020). Intestinal estrogen receptor beta suppresses colon inflammation and tumorigenesis in both sexes. Cancer Research, 80(16).
Gnann, C., Cesnik, A. J. & Lundberg, E. (2021). Illuminating Non-genetic Cellular Heterogeneity with Imaging-Based Spatial Proteomics. Trends in cancer, 7(4), 278-282.
Pinkard, H., Stuurman, N., Ivanov, I. E., Anthony, N. M., Ouyang, W., Li, B. ... Waller, L. (2021). Pycro-Manager : open-source software for customized and reproducible microscope control. Nature Methods, 18(3), 226-+.
Song, D., He, H., Sinha, I., Hases, L., Yan, F., Archer, A. ... Williams, C. (2021). Blocking Fra-1 sensitizes triple-negative breast cancer to PARP inhibitor. Cancer Letters, 506, 23-34.
Indukuri, R., Jafferali, M. H., Song, D., Damdimopoulos, A., Hases, L., Zhao, C. & Williams, C. (2021). Genome-wide estrogen receptor β chromatin binding in humancolon cancer cells reveals its tumor suppressor activity. International Journal of Cancer.
Indukuri, R., Hases, L., Archer, A. & Williams, C. (2021). Estrogen Receptor Beta Influences the Inflammatory p65 Cistrome in Colon Cancer Cells. Frontiers in Endocrinology, 12, 1-13.
Razzaq, M., Iglesias, M. J., Ibrahim-Kosta, M., Goumidi, L., Soukarieh, O., Proust, C. ... Tregouet, D.-A. (2021). An artificial neural network approach integrating plasma proteomics and genetic data identifies PLXNA4 as a new susceptibility locus for pulmonary embolism. Scientific Reports, 11(1).
Karlsson, M., Zhang, C., Mear, L., Zhong, W., Digre, A., Katona, B. ... Lindskog, C. (2021). A single-cell type transcriptomics map of human tissues. Science Advances, 7(31).
Ouyang, W., Winsnes, C. F., Hjelmare, M., Åkesson, L., Xu, H., Sullivan, D. P. ... Et al, (2020). Analysis of the Human Protein Atlas Image Classification competition (vol 16, pg 1254, 2019). Nature Methods, 17(1), 115-115.
Ouyang, W., Winsnes, C. F., Hjelmare, M., Åkesson, L., Xu, H., Sullivan, D. P. ... Et al, (2020). Analysis of the Human Protein Atlas Image Classification competition (vol 54, pg 2112, 2019). Nature Methods, 17(2), 241-241.
Bäckström, A., Kugel, L., Gnann, C., Xu, H., Aslan, J. E., Lundberg, E. & Stadler, C. (2020). A Sample Preparation Protocol for High Throughput Immunofluorescence of Suspension Cells on an Adherent Surface. Journal of Histochemistry and Cytochemistry, 68(7), 473-489.
Stenström, L. (2021). The spatiotemporal protein landscape of human cells (Doctoral thesis , KTH Royal Institute of Technology, Stockholm, TRITA-CBH-FOU 2021:45). Retrieved from
Iglesias, M. J., Kruse, L. D., Sanchez-Rivera, L., Enge, L., Dusart, P., Hong, M.-G. ... Butler, L. M. (2021). Identification of Endothelial Proteins in Plasma Associated With Cardiovascular Risk Factors. Arteriosclerosis, Thrombosis and Vascular Biology, 41(12), 2990-3004.
Frigo, D. E., Bondesson, M. & Williams, C. (2021). Nuclear receptors : from molecular mechanisms to therapeutics. In Williams, C Bondesson, M Frigo, DE (Ed.), Exploring Nuclear Receptors (pp. 847-856). Portland Press Ltd.
Bagheri, N., Carpenter, A. E., Lundberg, E., Plant, A. L. & Horwitz, R. (2022). Commentary The new era of quantitative cell imaging-challenges and opportunities. Molecular Cell, 82(2), 241-247.
Melani, R. D., Gerbasi, V. R., Anderson, L. C., Sikora, J. W., Toby, T. K., Hutton, J. E. ... Kelleher, N. L. (2022). The Blood Proteoform Atlas : A reference map of proteoforms in human hematopoietic cells. Science, 375(6579), 411-+.
Bendes, A., Dale, M., Mattsson, C., Dodig-Crnkovic, T., Iglesias, M. J., Schwenk, J. M. & Fredolini, C. (2021). Bead-Based Assays for Validating Proteomic Profiles in Body Fluids. In Protein Microarrays for Disease Analysis: Methods and Protocols (pp. 65-78). Springer Nature.
Iglesias, M. J., Schwenk, J. M. & Odeberg, J. (2021). Affinity Proteomics Assays for Cardiovascular and Atherosclerotic Disease Biomarkers. In Protein Microarrays for Disease Analysis: Methods and Protocols (pp. 163-179). Springer Nature.
Signorelli, M., Spitali, P., Al-Khalili Szigyarto, C., Tsonaka, R., Niks, E., Strauss, V. ... Consortium, T. M. (2021). Penalized regression calibration : A method for the prediction of survival outcomes using complex longitudinal and high-dimensional data. Statistics in Medicine, 40(27), 6178-6196.
LeDuc, R. D., Deutsch, E. W., Binz, P.-A., Fellers, R. T., Cesnik, A. J., Klein, J. A. ... Vizcaino, J. A. (2022). Proteomics Standards Initiative's ProForma 2.0 : Unifying the Encoding of Proteoforms and Peptidoforms br. Journal of Proteome Research, 21(4), 1189-1195.
Razzaq, M., Goumidi, L., Iglesias, M. J., Munsch, G., Bruzelius, M., Ibrahim-Kosta, M., Butler, L. M., Odeberg, J., Morange, P. -., Tregouet, D. A. (2021). Explainable Artificial Neural Network for Recurrent Venous Thromboembolism Based on Plasma Proteomics. In Computational Methods in Systems Biology19th International Conference, CMSB 2021, Bordeaux, France, September 22–24, 2021, Proceedings. (pp. 108-121). Springer Science and Business Media Deutschland GmbH.
Indukuri, R., Damdimopoulos, A. & Williams, C. (2022). An Optimized ChIP-Seq Protocol to Determine Chromatin Binding of Estrogen Receptor Beta. Methods in Molecular Biology, 2418, 203-221.
Birgersson, M., Katona, B., Lindskog, C., Pontén, F. & Williams, C. (2022). Antibody Validation for Estrogen Receptor Beta. Methods in Molecular Biology, 2418, 1-23.
Archer, A., Kutter, C. & Williams, C. (2022). Expression Profiles of Estrogen-Regulated MicroRNAs in Cancer Cells. Methods in Molecular Biology, 2418, 313-343.
Liu, Q., Simin, J., Debelius, J., Fall, K., Sadr-Azodi, O., Engstrand, L. ... Brusselaers, N. (2021). Menopausal hormone therapies and risk of colorectal cancer : a Swedish matched-cohort study. Alimentary Pharmacology and Therapeutics, 53(11), 1216-1225.
Simin, J., Liu, Q., Wang, X., Fall, K., Williams, C., Callens, S. ... Brusselaers, N. (2021). Prediagnostic use of estrogen-only therapy is associated with improved colorectal cancer survival in menopausal women : a Swedish population-based cohort study. Acta Oncologica, 60(7), 881-887.
Edfors, F., Iglesias, M. J., Butler, L. M. & Odeberg, J. (2022). Proteomics in thrombosis research. RESEARCH AND PRACTICE IN THROMBOSIS AND HAEMOSTASIS, 6(3).
Imbert, A., Ouyang, W., Safieddine, A., Coleno, E., Zimmer, C., Bertrand, E. ... Mueller, F. (2022). FISH-quant v2 : a scalable and modular tool for smFISH image analysis. RNA : A publication of the RNA Society, 28(6), 786-795.
Hickey, J. W., Neumann, E. K., Radtke, A. J., Camarillo, J. M., Beuschel, R. T., Albanese, A. ... Saka, S. K. (2022). Spatial mapping of protein composition and tissue organization : a primer for multiplexed antibody-based imaging. Nature Methods, 19(3), 284-295.
Rozenblatt-Rosen, O., Shin, J. W., Rood, J. E., Hupalowska, A., Ardlie, K., Clatworthy, M. ... Group, H. C. A. S. A. T. W. (2021). Building a high-quality Human Cell Atlas. Nature Biotechnology, 39(2), 149-153.
Belongs to: Department of Protein Science
Last changed: Jan 09, 2019