Publikationer av Fredrik Edfors Arfwidsson
Refereegranskade
Artiklar
[1]
Shi, M., Shi, M., Karlsson, M., Alvez, M. B., Jin, H., Yuan, M. ... et al., (2025). A resource for whole-body gene expression map of human tissues based on integration of single cell and bulk transcriptomics. Genome Biology, 26(1).
[2]
Villanueva Raisman, A., Kotol, D., Altay, Ö., Mardinoglu, A., Atak, D., Yurdaydin, C. ... Edfors, F. (2025). Advancing Chronic Liver Disease Diagnoses: Targeted Proteomics for the Non-Invasive Detection of Fibrosis. Livers, 5(1).
[3]
Johansson, C., Schrama, E. J., Kotol, D., Hober, A., Koeks, Z., van de Velde, N. M. ... Al-Khalili Szigyarto, C. (2025). Contrasting Becker and Duchenne muscular dystrophy serum biomarker candidates by using data independent acquisition LC-MS/MS. Skeletal Muscle, 15(1).
[4]
Wang, J., Zenere, A., Wang, X., Bergström, G., Edfors, F., Uhlén, M. & Zhong, W. (2025). Longitudinal analysis of genetic and environmental interplay in human metabolic profiles and the implication for metabolic health. Genome Medicine, 17(1).
[5]
Johansson, E., Iglesias, M. J., Odeberg, J. & Edfors, F. (2025). Shaping the future of precision medicine: plasma proteomics to uncover insights in thrombosis. Expert Review of Proteomics, 22(6), 237-254.
[6]
Zheng, T., Kotol, D., Sjöberg, R., Mitsios, N., Uhlén, M., Zhong, W. ... Mulder, J. (2024). Characterization of reduced astrocyte creatine kinase levels in Alzheimer's disease. Glia, 72(9), 1590-1603.
[7]
Sdougkou, K., Papazian, S., Bonnefille, B., Xie, H., Edfors, F., Fagerberg, L. ... Martin, J. W. (2024). Longitudinal Exposomics in a Multiomic Wellness Cohort Reveals Distinctive and Dynamic Environmental Chemical Mixtures in Blood. Environmental Science and Technology, 58(37), 16302-16315.
[8]
Löfgren, L., von Euler Chelpin, M., Bhat, M., Althage, M., Hober, A., Edfors, F. ... Miliotis, T. (2024). Patient-Centric Quantitative Microsampling for Accurate Determination of Urine Albumin to Creatinine Ratio (UACR) in a Clinical Setting. The Journal of Applied Laboratory Medicine, 9(2), 329-341.
[9]
Geyer, P. E., Hornburg, D., Pernemalm, M., Hauck, S. M., Palaniappan, K. K., Albrecht, V. ... Schwenk, J. M. (2024). The Circulating Proteome-Technological Developments, Current Challenges, and Future Trends. Journal of Proteome Research, 23(12), 5279-5295.
[10]
Kotol, D., Woessmann, J., Hober, A., Alvez, M. B., Tran Minh, K. H., Pontén, F. ... Edfors, F. (2023). Absolute Quantification of Pan-Cancer Plasma Proteomes Reveals Unique Signature in Multiple Myeloma. Cancers, 15(19).
[11]
Woessmann, J., Petrosius, V., Üresin, N., Kotol, D., Aragon-Fernandez, P., Hober, A. ... Schoof, E. M. (2023). Assessing the Role of Trypsin in Quantitative Plasma and Single-Cell Proteomics toward Clinical Application. Analytical Chemistry, 95(36), 13649-13658.
[12]
Iglesias, M. J., Sanchez-Rivera, L., Ibrahim-Kosta, M., Naudin, C., Munsch, G., Goumidi, L. ... Odeberg, J. (2023). Elevated plasma complement factor H related 5 protein is associated with venous thromboembolism. Nature Communications, 14(1).
[13]
Sporre, E., Karlsen, J., Schriever, K., Asplund-Samuelsson, J., Janasch, M., Strandberg, L. ... Hudson, E. P. (2023). Metabolite interactions in the bacterial Calvin cycle and implications for flux regulation. Communications Biology, 6(1).
[14]
Alvez, M. B., Edfors, F., von Feilitzen, K., Zwahlen, M., Mardinoglu, A., Edqvist, P. H. ... Uhlén, M. (2023). Next generation pan-cancer blood proteome profiling using proximity extension assay. Nature Communications, 14(1).
[15]
Johansson, C., Hunt, H., Signorelli, M., Edfors, F., Hober, A., Svensson, A.-S. ... Al-Khalili Szigyarto, C. (2023). Orthogonal proteomics methods warrant the development of Duchenne muscular dystrophy biomarkers. Clinical Proteomics, 20(1).
[16]
Hober, A., Rekanovic, M., Forsström, B., Hansson, S., Kotol, D., Percy, A. J. ... Miliotis, T. (2023). Targeted proteomics using stable isotope labeled protein fragments enables precise and robust determination of total apolipoprotein(a) in human plasma. PLOS ONE, 18(2 February).
[17]
Woessmann, J., Kotol, D., Hober, A., Uhlén, M. & Edfors, F. (2022). Addressing the Protease Bias in Quantitative Proteomics. Journal of Proteome Research, 21(10), 2526-2534.
[18]
Malm, M., Kuo, C.-C., Moradi, M., Mebrahtu, A., Wistbacka, N., Razavi, R. ... Rockberg, J. (2022). Harnessing secretory pathway differences between HEK293 and CHO to rescue production of difficult to express proteins. Metabolic engineering, 72, 171-187.
[19]
Edfors, F., Iglesias, M. J., Butler, L. M. & Odeberg, J. (2022). Proteomics in thrombosis research. RESEARCH AND PRACTICE IN THROMBOSIS AND HAEMOSTASIS, 6(3).
[20]
Saghaleyni, R., Malm, M., Moruzzi, N., Zrimec, J., Razavi, R., Wistbacka, N. ... Rockberg, J. (2022). Report Enhanced metabolism and negative regulation of ER stress support higher erythropoietin production in HEK293 cells. Cell Reports, 39(11), 110936.
[21]
Karlsson, M., Zhang, C., Mear, L., Zhong, W., Digre, A., Katona, B. ... Lindskog, C. (2021). A single-cell type transcriptomics map of human tissues. Science Advances, 7(31).
[22]
Karlsson, M. J., Svedman, F. C., Abdellah, T., Kotol, D., Hoiom, V., Fagerberg, L. ... Maddalo, G. (2021). Inflammation and Apolipoproteins Are Potential Biomarkers for Stratification of Cutaneous Melanoma Patients for Immunotherapy and Targeted Therapy. Cancer Research, 81(9), 2545-2555.
[23]
Gummesson, A., Björnson, E., Fagerberg, L., Zhong, W., Abdellah, T., Edfors, F. ... Bergström, G. (2021). Longitudinal plasma protein profiling of newly diagnosed type 2 diabetes. EBioMedicine, 63.
[24]
Zhong, W., Altay, Ö., Arif, M., Edfors, F., Doganay, L., Mardinoglu, A. ... Fagerberg, L. (2021). Next generation plasma proteome profiling of COVID-19 patients with mild to moderate symptoms. EBioMedicine, 74, 103723.
[25]
Zhong, W., Edfors, F., Gummesson, A., Bergstroem, G., Fagerberg, L. & Uhlén, M. (2021). Next generation plasma proteome profiling to monitor health and disease. Nature Communications, 12(1).
[26]
Hober, A., Hua, T. K., Foley, D., McDonald, T., Vissers, J. P., Pattison, R. ... Edfors, F. (2021). Rapid and sensitive detection of SARS-CoV-2 infection using quantitative peptide enrichment LC-MS analysis. eLIFE, 10.
[27]
Kotol, D., Hober, A., Strandberg, L., Svensson, A.-S., Uhlén, M. & Edfors, F. (2021). Targeted proteomics analysis of plasma proteins using recombinant protein standards for addition only workflows. BioTechniques, 71(3), 473-483.
[28]
Sjöstedt, E., Zhong, W., Fagerberg, L., Karlsson, M., Mitsios, N., Adori, C. ... Mulder, J. (2020). An atlas of the protein-coding genes in the human, pig, and mouse brain. Science, 367(6482), 1090-+.
[29]
Dodig-Crnkovic, T., Hong, M.-G., Thomas, C. E., Häussler, R. S., Bendes, A., Dale, M. ... Schwenk, J. M. (2020). Facets of individual-specific health signatures determined from longitudinal plasma proteome profiling. EBioMedicine, 57.
[30]
Tegel, H., Dannemeyer, M., Kanje, S., Sivertsson, Å., Berling, A., Svensson, A.-S. ... Hober, S. (2020). High throughput generation of a resource of the human secretome in mammalian cells. New Biotechnology, 58, 45-54.
[31]
Abdellah, T., Gummesson, A., Zhong, W., Koistinen, I. S., Lakshmikanth, T., Olsson, L. M. ... Fagerberg, L. (2020). Integration of molecular profiles in a longitudinal wellness profiling cohort. Nature Communications, 11(1).
[32]
Kotol, D., Hunt, H., Hober, A., Karlsson, M. J., Forsström, B., Gummesson, A. ... Edfors, F. (2020). Longitudinal Plasma Protein Profiling Using Targeted Proteomics and Recombinant Protein Standards. Journal of Proteome Research, 19(12), 4815-4825.
[33]
Kagan, J., Moritz, R. L., Mazurchuk, R., Lee, J. H., Kharchenko, P. V., Rozenblatt-Rosen, O. ... Srivastava, S. (2020). National Cancer Institute Think-Tank Meeting Report on Proteomic Cartography and Biomarkers at the Single-Cell Level : Interrogation of Premalignant Lesions. Journal of Proteome Research, 19(5), 1900-1912.
[34]
Hong, M.-G., Dodig-Crnkovic, T., Chen, X., Drobin, K., Lee, W., Wang, Y. ... Schwenk, J. M. (2020). Profiles of histidine-rich glycoprotein associate with age and risk of all-cause mortality. Life Science Alliance, 3(10), e202000817.
[35]
Zhong, W., Gummesson, A., Abdellah, T., Karlsson, M., Hong, M.-G., Schwenk, J. M. ... Uhlén, M. (2020). Whole-genome sequence association analysis of blood proteins in a longitudinal wellness cohort. Genome Medicine, 12(1).
[36]
Uhlén, M., Karlsson, M., Zhong, W., Abdellah, T., Pou, C., Mikes, J. ... Brodin, P. (2019). A genome-wide transcriptomic analysis of protein-coding genes in human blood cells. Science, 366(6472), 1471-+.
[37]
Hober, A., Edfors, F., Ryaboshapkina, M., Malmqvist, J., Rosengren, L., Percy, A. J. ... Miliotis, T. (2019). Absolute Quantification of Apolipoproteins Following Treatment with Omega-3 Carboxylic Acids and Fenofibrate Using a High Precision Stable Isotope-labeled Recombinant Protein Fragments Based SRM Assay. Molecular & Cellular Proteomics, 18(12), 2433-2446.
[38]
Andersson, A., Remnestål, J., Nellgård, B., Vunk, H., Kotol, D., Edfors, F. ... Fredolini, C. (2019). Development of parallel reaction monitoring assays for cerebrospinal fluid proteins associated with Alzheimer's disease. Clinica Chimica Acta, 494, 79-93.
[39]
Edfors, F., Forsström, B., Vunk, H., Kotol, D., Fredolini, C., Maddalo, G. ... Uhlén, M. (2019). Screening a Resource of Recombinant Protein Fragments for Targeted Proteomics. Journal of Proteome Research, 18(7), 2706-2718.
[40]
Häussler, R. S., Bendes, A., Iglesias, M. J., Sanchez-Rivera, L., Dodig-Crnkovic, T., Byström, S. ... Schwenk, J. M. (2019). Systematic Development of Sandwich Immunoassays for the Plasma Secretome. Proteomics.
[41]
Uhlén, M., Karlsson, M. J., Hober, A., Svensson, A.-S., Scheffel, J., Kotol, D. ... Sivertsson, Å. (2019). The human secretome. Science Signaling, 12(609).
[42]
The, M., Edfors, F., Perez-Riverol, Y., Payne, S. H., Hoopmann, M. R., Palmblad, M. ... Käll, L. (2018). A Protein Standard That Emulates Homology for the Characterization of Protein Inference Algorithms. Journal of Proteome Research, 17(5), 1879-1886.
[43]
Edfors, F., Hober, A., Linderbäck, K., Maddalo, G., Azimi, A., Sivertsson, Å. ... Uhlén, M. (2018). Enhanced validation of antibodies for research applications. Nature Communications, 9.
[44]
Jahn, M., Vialas, V., Karlsen, J., Maddalo, G., Edfors, F., Forsström, B. ... Hudson, E. P. (2018). Growth of Cyanobacteria Is Constrained by the Abundance of Light and Carbon Assimilation Proteins. Cell Reports, 25(2), 478-+.
[45]
Zamani, L., Lundqvist, M., Zhang, Y., Aberg, M., Edfors, F., Bidkhori, G. ... Chotteau, V. (2018). High Cell Density Perfusion Culture has a Maintained Exoproteome and Metabolome. Biotechnology Journal, 13(10).
[46]
Azimi, A., Caramuta, S., Seashore-Ludlow, B., Boström, J., Robinson, J. L., Edfors, F. ... Maddalo, G. (2018). Targeting CDK2 overcomes melanoma resistance against BRAF and Hsp90 inhibitors. Molecular Systems Biology, 14(3).
[47]
Uhlén, M., Zhang, C., Lee, S., Sjöstedt, E., Fagerberg, L., Bidkhori, G. ... Ponten, F. (2017). A pathology atlas of the human cancer transcriptome. Science, 357(6352), 660-+.
[48]
Edfors, F., Danielsson, F., Hallström, B. M., Käll, L., Lundberg, E., Ponten, F. ... Uhlén, M. (2016). Gene-specific correlation of RNA and protein levels in human cells and tissues. Molecular Systems Biology, 12(10).
[49]
Fredolini, C., Byström, S., Pin, E., Edfors, F., Tamburro, D., Iglesias, M. J. ... Schwenk, J. M. (2016). Immunocapture strategies in translational proteomics. Expert Review of Proteomics, 13(1), 83-98.
[50]
Wayne, G., Graves, A., Hassabis, D., Saha, S., Weber, C. A., Hyman, A. A. ... Ziv, N. E. (2016). Principles of Systems Biology, No. 11. CELL SYSTEMS, 3(5), 406-410.
[51]
Lundqvist, M., Edfors, F., Sivertsson, Å., Hallström, B. M., Hudson, E. P., Tegel, H. ... Rockberg, J. (2015). Solid-phase cloning for high-throughput assembly of single and multiple DNA parts. Nucleic Acids Research, 43(7).
[52]
Edfors, F., Boström, T., Forsström, B., Zeiler, M., Johansson, H. J., Lundberg, E. ... Uhlén, M. (2014). Immunoproteomics using polyclonal antibodies and stable isotope-labeled affinity-purified recombinant proteins. Molecular & Cellular Proteomics, 13(6), 1611-1624.
Icke refereegranskade
Artiklar
[53]
Balyan, R., Rucevic, M., Alvez, M. B., Lamers, R., Caster, O., Andersson, H. ... Uhlén, M. (2025). Next generation proteomic profiling of a pan-cancer cohort for the development of screening tools for cancer. Cancer Science, 116, 1715-1715.
Avhandlingar
[54]
Edfors, F. (2016). Targeted proteomics methods for protein quantification of human cells, tissues and blood (Doktorsavhandling , Kungliga Tekniska högskolan, Stockholm, TRITA-BIO-Report 2016:16). Hämtad från https://urn.kb.se/resolve?urn=urn:nbn:se:kth:diva-193951.
Övriga
[55]
Sporre, E., Karlsen, J., Schriever, K., Asplund-Samuelsson, J., Janasch, M., Strandberg, L., Kotol, D., Zeckey, L., Piazza, I., Syrén, P.-O., Edfors, F., Hudson, E. P. (2022). Metabolite interactions in the bacterial Calvin cycle and implications for flux regulation. (Manuskript).
[56]
Edfors, F., Forsström, B., Fredolini, C., Boström, T., Maddalo, G., Svensson, A.-S., Tegel, H., Nilsson, P., Jochen, S., Uhlén, M. (). A recombinant protein standard resource for targeted proteomics. (Manuskript).
[57]
Shi, M., Loren, M., Karlsson, M., Alvez, M. B., Andreas, D., Rutger, S., Borbala, K., Jimmy, V., Emil, L., Feria, H., Jin, H., Yuan, M., Li, X., Yang, H., Song, X., Sjöstedt, E., Edfors, F., Oksvold, P., von Feilitzen, K., Zwahlen, M., Forsberg, M., Johansson, F., Jan, M., Tomas, H., Yonglun, L., Lynn, B., Wen, Z., Mardinoglu, A., Sivertsson, Å., Fredrik, P., Fagerberg, L., Cecilia, L., Uhlén, M., Zhang, C. (). A resource for whole-body gene expression map of human tissues based on integration of single cell and bulk transcriptomics. (Manuskript).
[58]
Dezfouli, M., Redin, D., Borgström, E., Edfors, F., Uhlén, M., Schwenk, J. M., Ahmadian, A. (). Droplet-based Immuno-Sequencing to Deconvolute Affinity Recognition Events. (Manuskript).
[59]
Hober, A., Strandberg, L., von Feilitzen, K., Zwahlen, M., Kotol, D., Forsström, B., Sjöberg, A., Tegel, H., Uhlén, M., Edfors, F. (). Evaluation of an enhanced antibody-validation strategy for Western blot applications based on migration pattern recognition. (Manuskript).
[60]
Karlsson, M., Alvez, M. B., Shi, M., Zhang, C., Méar, L., Zhong, W., Schutten, R., Hikmet, F., Digre, A., Katona, B., Vuu, J., Sjöstedt, E., Bosic, M., Edfors, F., Oksvold, P., von Feilitzen, K., Zwahlen, M., Forsberg, M., Johansson, F., Mulder, J., Mardinoglu, A., Sivertsson, Å., Ponten, F., Lindskog, C., Fagerberg, L., Uhlén, M. (). Genome-wide single cell annotation of the human protein-coding genes. (Manuskript).
[61]
Malm, M., Kuo, C.-C., Moradi Barzadd, M., Mebrahtu, A., Wistbacka, N., Razavi, R., Volk, A.-L., Lundqvist, M., Kotol, D., Edfors, F., Gräslund, T., Chotteau, V., Field, R., Varley, P. G., Roth, R. G., Lewis, N. E., Hatton, D., Rockberg, J. (). Harnessing secretory pathway differences between HEK293 and CHO to rescue production of difficult to express proteins. (Manuskript).
[62]
Sporre, E., Karlsen, J., Schriever, K., Asplund-Samuelsson, J., Janasch, M., Kotol, D., Strandberg, L., Zeckey, L., Piazza, I., Syrén, P.-O., Edfors, F., Hudson, E. P. (). Metabolite interactions in the bacterial Calvin cycle and implications for flux regulation. (Manuskript).
[63]
Sporre, E., Karlsen, J., Schriever, K., Asplund-Samuelsson, J., Janasch, M., Kotol, D., Strandberg, L., Zeckey, L., Piazza, I., Syrén, P.-O., Edfors, F., Hudson, P. (). Metabolite-level enzyme regulation in and around the bacterial Calvin cycle revealed by interaction proteomics. (Manuskript).
[64]
Johansson, C., Schrama, E., Kotol, D., Hober, A., Koeks, Z., van de Velde, N., Verschuuren, J. J.G.M., Uhlén, M., Niks, E. H., Edfors, F., Spitali, P., Al-Khalili Szigyarto, C. (). Monitoring Biomarker Study in Becker Muscular Dystrophy using Data Independent Acquisition LC-MS/MS. (Manuskript).
[65]
Hober, A., Rekanovic, M., Forsström, B., Hansson, S., Kotol, D., Percy, A. J., Uhlén, M., Oscarsson, J., Edfors, F., Miliotis, T. (). Targeted Proteomics Using Stable Isotope Labeled Protein Fragments Enables Precise and Robust Determination of Total Apolipoprotein(a) in Human Plasma. (Manuskript).
[66]
Edfors, F., Linderbäck, K., Sivertsson, Å., Danielsson, F., Fagerberg, L., Lundberg, E., Alm, T., Forsström, B., Uhlén, M. (). Validation of antibodies for Western blot applications using orthogonal methods. (Manuskript).
Senaste synkning med DiVA:
2025-09-13 22:36:51 UTC