Course literature

We will use the book

* Biological Sequence Analysis by Durbin, Eddy, Krogh, and Mitchison
in the course, but we will also cover topics not found in that book.

Other peoples' lecture notes
* Ben Langmead on Burrows-Wheeler Transform and the FM index
* Michael Schatz on the Burrows-Wheeler transform.
Some relevant papers:¶
* "Sequence Similarity Network Reveals Common Ancestry of Multidomain Proteins" by Song et al, PLoS Comp Biol, 2007.
* "Classification of DNA sequences using Bloom filters" by Stranneheim et al, Bioinformatics, 2009.