# CST Publications

Link to the full list of publications by CST personnel in DIVA

## CST's 50 Most Recent Publications

[1]

F. Fiebig and A. Lansner,
"A Spiking Working Memory Model Based on Hebbian Short-Term Potentiation,"

*Journal of Neuroscience*, vol. 37, no. 1, pp. 83-96, 2017.
[2]

G. Iatropoulos

*et al.*, "Analysis of Statistics and Semantic Relations of Odor-Describing Words in Written Olfactory Versus Non- Olfactory Contexts,"*Chemical Senses*, vol. 42, no. 2, pp. E34-E35, 2017.
[3]

M. Frånberg

*et al.*, "Fast and general tests of genetic interaction for genome-wide association studies,"*PloS Computational Biology*, vol. 13, no. 6, 2017.
[4]

I. Ullah

*et al.*, "Evolutionary history of metastatic breast cancer reveals minimal seeding from axillary lymph nodes,"*Journal of Clinical Investigation*, vol. 128, no. 4, pp. 1355-1370, 2018.
[5]

J. Bahuguna

*et al.*, "Homologous Basal Ganglia Network Models in Physiological and Parkinsonian Conditions,"*Frontiers in Computational Neuroscience*, vol. 11, 2017.
[6]

P. Balbi, P. Massobrio and J. Hellgren Kotaleski,
"A single Markov-type kinetic model accounting for the macroscopic currents of all human voltage-gated sodium channel isoforms,"

*PloS Computational Biology*, vol. 13, no. 9, 2017.
[7]

J. Belic, A. Kumar and J. Hellgren Kotaleski,
"Interactions in the Striatal Network with Different Oscillation Frequencies,"
in

*Artificial Neural Networks and Machine Learning – ICANN. Lecture Notes in Computer Science*, 2017, pp. 129-136.
[8]

V. Avramova

*et al.*, "A virtual poster presenter using mixed reality," in*17th International Conference on Intelligent Virtual Agents, IVA 2017*, 2017, pp. 25-28.
[9]

F. Yang

*et al.*, "Expressive Virtual Characters for Social Demonstration Games," in*2017 9th International Conference on Virtual Worlds and Games for Serious Applications, VS-Games 2017 - Proceedings*, 2017, pp. 217-224.
[10]

P. Herman, G. Prasad and T. M. McGinnity,
"Designing an Interval Type-2 Fuzzy Logic System for Handling Uncertainty Effects in Brain-Computer Interface Classification of Motor Imagery Induced EEG Patterns,"

*IEEE transactions on fuzzy systems*, vol. 25, no. 1, pp. 29-42, 2017.
[11]

R. Mbuvha

*et al.*, "Bayesian neural networks for one-hour ahead wind power forecasting," in*2017 6th International Conference on Renewable Energy Research and Applications, ICRERA 2017*, 2017, pp. 591-596.
[12]

N. C. Degirmenci

*et al.*, "A Unified Numerical Simulation of Vowel Production That Comprises Phonation and the Emitted Sound," in*Proceedings of the Annual Conference of the International Speech Communication Association, INTERSPEECH 2017*, 2017, pp. 3492-3496.
[13]

A. de Giorgio

*et al.*, "Human-machine Collaboration in Virtual Reality for Adaptive Production Engineering,"*Procedia Manufacturing*, vol. 11, pp. 1279-1287, 2017.
[14]

Y. Jansson and T. Lindeberg,
"Dynamic texture recognition using time-causal and time-recursive spatio-temporal receptive fields,"
, 2017.

[15]

Y. Jansson and T. Lindeberg,
"Dynamic texture recognition using time-causal spatio-temporal scale-space filters,"
in

*Scale Space and Variational Methods in Computer Vision*, 2017, pp. 16-28.
[16]

D. Larsson

*et al.*, "Estimation of left ventricular blood flow parameters : Clinical application of patient-specific CFD simulations from 4D echocardiography," in*Medical Imaging 2017 : Ultrasonic Imaging and Tomography*, 2017.
[17]

S. Rivas-Gomez

*et al.*, "Extending message passing interface windows to storage," in*Proceedings - 2017 17th IEEE/ACM International Symposium on Cluster, Cloud and Grid Computing, CCGRID 2017*, 2017, pp. 728-730.
[18]

D. Hussain,
"The development of ICT tools for E-inclusion qualities : Work in progress,"
in

*20th International Conference on Interactive Collaborative Learning, ICL 2017*, 2018, pp. 734-740.
[19]

P. Thoman

*et al.*, "A taxonomy of task-based parallel programming technologies for high-performance computing,"*Journal of Supercomputing*, vol. 74, no. 4, pp. 1422-1434, 2018.
[20]

S. Molnos

*et al.*, "A network-based detection scheme for the jet stream core,"*Earth System Dynamics*, vol. 8, no. 1, pp. 75-89, 2017.
[21]

H. Saikia and T. Weinkauf,
"Global Feature Tracking and Similarity Estimation in Time-Dependent Scalar Fields,"

*Computer graphics forum (Print)*, vol. 36, no. 3, pp. 1-11, 2017.
[22]

J. H. Spühler

*et al.*, "3D Fluid-Structure Interaction Simulation of Aortic Valves Using a Unified Continuum ALE FEM Model,"*Frontiers in Physiology*, vol. 9, 2018.
[23]

J. Hoffman

*et al.*, "Computability and Adaptivity in CFD," in*Encyclopedia of Computational Mechanics,*Erwin Stein and René de Borst and Thomas J. R. Hughes Ed., 2nd ed. : John Wiley & Sons, 2018.
[24]

C.-Y. Gao, H.-J. Zhou and E. Aurell,
"Correlation-compressed direct-coupling analysis,"

*Physical review. E*, vol. 98, no. 3, 2018.
[25]

J. Jordan

*et al.*, "Extremely Scalable Spiking Neuronal Network Simulation Code : From Laptops to Exascale Computers,"*Frontiers in Neuroinformatics*, vol. 12, 2018.
[26]

E. Aurell,
"Global Estimates of Errors in Quantum Computation by the Feynman-Vernon Formalism,"

*Journal of statistical physics*, vol. 171, no. 5, pp. 745-767, 2018.
[27]

C. Brasko

*et al.*, "Intelligent image-based in situ single-cell isolation,"*Nature Communications*, vol. 9, 2018.
[28]

A. Karlsson

*et al.*, "A parallel microsimulation package for modelling cancer screening policies," in*Proceedings of the 2016 IEEE 12th International Conference on e-Science, e-Science 2016*, 2017, pp. 323-330.
[29]

M. J. Skwark

*et al.*, "Interacting networks of resistance, virulence and core machinery genes identified by genome-wide epistasis analysis,"*PLoS Genetics*, vol. 13, no. 2, 2017.
[30]

T. Lindeberg,
"Spatio-temporal scale selection in video data,"

*Journal of Mathematical Imaging and Vision*, vol. 60, no. 4, pp. 525-562, 2018.
[31]

J. Jansson

*et al.*, "Time-resolved Adaptive Direct FEM Simulation of High-lift Aircraft Configurations : Chapter in "Numerical Simulation of the Aerodynamics of High-Lift Configurations'", Springer," in*Numerical Simulation of the Aerodynamics of High-Lift Configurations,*Omar Darío López Mejia andJaime A. Escobar Gomez Ed., : Springer, 2018, pp. 67-92.
[32]

K. Onishi

*et al.*, "A Deployment of HPC Algorithm into Pre/Post-Processing for Industrial CFD on K-Computer," in*The International Conference for High Performance Computing, Networking, Storage, and Analysis, Denver, Colorado USA, Nov 2017 (SC’17).*, 2017.
[33]

S. Spreizer

*et al.*, "Activity Dynamics and Signal Representation in a Striatal Network Model with Distance-Dependent Connectivity,"*eNeuro*, 2017.
[34]

J. Jansson, N. C. Degirmenci and J. Hoffman,
"Adaptive unified continuum FEM modeling of a 3D FSI benchmark problem,"

*International Journal for Numerical Methods in Biomedical Engineering*, vol. 33, no. 9, 2017.
[35]

F. Piccinini

*et al.*, "Advanced Cell Classifier : User-Friendly Machine-Learning-Based Software for Discovering Phenotypes in High-Content Imaging Data,"*CELL SYSTEMS*, vol. 4, no. 6, pp. 651-+, 2017.
[36]

H. Saikia,
"Comparison and Tracking Methods for Interactive Visualization of Topological Structures in Scalar Fields,"
Doctoral thesis : KTH Royal Institute of Technology, TRITA-CSC-A, 2017:23, 2017.

[37]

R. Iakymchuk, S. M. Shakhno and H. P. Yarmola,
"CONVERGENCE ANALYSIS OF A TWO-STEP MODIFICATION OF THE GAUSS-NEWTON METHOD AND ITS APPLICATIONS,"

*JOURNAL OF NUMERICAL AND APPLIED MATHEMATICS*, vol. 3, no. 126, pp. 61-74, 2017.
[38]

K. Szalisznyó

*et al.*, "Cortico-striatal language pathways dynamically adjust for syntactic complexity : A computational study,"*Brain and Language*, vol. 164, pp. 53-62, 2017.
[39]

I. B. Peng,
"Data Movement on Emerging Large-Scale Parallel Systems,"
Doctoral thesis : KTH Royal Institute of Technology, TRITA-CSC-A, 2017:25, 2017.

[40]

[41]

T. Lindeberg,
"Discrete approximations of the affine Gaussian derivative model for visual receptive fields,"
KTH Royal Institute of Technology, 2017.

[42]

J. Deca

*et al.*, "Electron and Ion Dynamics of the Solar Wind Interaction with a Weakly Outgassing Comet,"*Physical Review Letters*, vol. 118, no. 20, 2017.
[43]

Yu. V. Khotyaintsev

*et al.*, "Energy conversion at dipolarization fronts,"*Geophysical Research Letters*, vol. 44, no. 3, pp. 1234-1242, 2017.
[44]

G. Lapenta

*et al.*, "Energy exchanges in reconnection outflows,"*Plasma Physics and Controlled Fusion*, vol. 59, no. 1, 2017.
[45]

I. B. Peng

*et al.*, "Exploring Application Performance on Emerging Hybrid-Memory Supercomputers," in*Proceedings - 18th IEEE International Conference on High Performance Computing and Communications, 14th IEEE International Conference on Smart City and 2nd IEEE International Conference on Data Science and Systems, HPCC/SmartCity/DSS 2016*, 2017, pp. 473-480.
[46]

M. Paetzel

*et al.*, "Exploring the link between self-assessed mimicry and embodiment in HRI," in*ACM/IEEE International Conference on Human-Robot Interaction*, 2017, pp. 245-246.
[47]

I. B. Peng

*et al.*, "Exploring the performance benefit of hybrid memory system on HPC environments," in*Proceedings - 2017 IEEE 31st International Parallel and Distributed Processing Symposium Workshops, IPDPSW 2017*, 2017, pp. 683-692.
[48]

J. Hoffman

*et al.*, "FEniCS-HPC: Coupled Multiphysics in Computational Fluid Dynamics," in*High-Performance Scientific Computing : Jülich Aachen Research Alliance (JARA) High-Performance Computing Symposium*, 2017, pp. 58-69.
[49]

I. B. Peng

*et al.*, "Idle period propagation in message-passing applications," in*Proceedings - 18th IEEE International Conference on High Performance Computing and Communications, 14th IEEE International Conference on Smart City and 2nd IEEE International Conference on Data Science and Systems, HPCC/SmartCity/DSS 2016*, 2017, pp. 937-944.
[50]

E. Wärnberg and A. Kumar,
"Perturbing low dimensional activity manifolds in spiking neuronal networks,"

*PLOS Computational Biology*, 2019.