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Publications

50 latest publications

[1]
Jotanovic, J., Abdellah, T., Hekmati, N., Sivertsson, Å., Lindskog, C., Uhlén, M. ... Casar-Borota, O. (2024). Transcriptome Analysis Reveals Distinct Patterns Between the Invasive and Noninvasive Pituitary Neuroendocrine Tumors. Journal of the Endocrine Society, 8(5).
[2]
Bidkhori, G. & Shoaie, S. (2024). MIGRENE : The Toolbox for Microbial and Individualized GEMs, Reactobiome and Community Network Modelling. Metabolites, 14(3).
[3]
Bonanini, F., Singh, M., Yang, H., Kurek, D., Harms, A. C., Mardinoglu, A. & Hankemeier, T. (2024). A comparison between different human hepatocyte models reveals profound differences in net glucose production, lipid composition and metabolism in vitro. Experimental Cell Research, 437(1).
[4]
Charras, Q., Rey, P., Guillemain, D., Dourguin, F., Laganier, H., Peschoux, S. ... Jungas, C. (2024). An efficient protocol for extracting thylakoid membranes and total leaf proteins from Posidonia oceanica and other polyphenol-rich plants. Plant Methods, 20(1).
[5]
Royer, P., Björnson, E., Adiels, M., Alvez, M. B., Fagerberg, L., Bäckhed, F. ... Bergström, G. (2024). Plasma proteomics for prediction of subclinical coronary artery calcifications in primary prevention. American Heart Journal, 271, 55-67.
[6]
Matić, J., Akladios, F., Battisti, U. M., Håversen, L., Nain-Perez, A., Füchtbauer, A. F. ... Grøtli, M. (2024). Sulfone-based human liver pyruvate kinase inhibitors – Design, synthesis and in vitro bioactivity. European Journal of Medicinal Chemistry, 269.
[7]
Löfgren, L., von Euler Chelpin, M., Bhat, M., Althage, M., Hober, A., Edfors, F. ... Miliotis, T. (2024). Patient-Centric Quantitative Microsampling for Accurate Determination of Urine Albumin to Creatinine Ratio (UACR) in a Clinical Setting. The Journal of Applied Laboratory Medicine, 9(2), 329-341.
[8]
Lu, C., Donners, M. M.P.C., de Baaij, J. B.J., Jin, H., Otten, J. J.T., Manca, M. ... Biessen, E. A.L. (2024). Identification of a gene network driving the attenuated response to lipopolysaccharide of monocytes from hypertensive coronary artery disease patients. Frontiers in Immunology, 15.
[9]
Öling, S., Struck, E., Noreen-Thorsen, M., Zwahlen, M., von Feilitzen, K., Odeberg, J. ... Butler, L. M. (2024). A human stomach cell type transcriptome atlas. BMC Biology, 22(1).
[10]
Turkez, H., Arslan, M. E., Selvitopi, H., Kadi, A., Oner, S. & Mardinoglu, A. (2024). Drug Synergism of Anticancer Action in Combination with Favipiravir and Paclitaxel on Neuroblastoma Cells. Medicina, 60(1).
[11]
Reitzner, S. M., Emanuelsson, E. B., Arif, M., Kaczkowski, B., Kwon, A. T., Mardinoglu, A. ... Sundberg, C. J. (2024). Molecular profiling of high-level athlete skeletal muscle after acute endurance or resistance exercise : A systems biology approach. Molecular Metabolism, 79.
[12]
Gouleni, N., Di Rienzo, A., Oner, S., Karagoz, C., Arslan, M. E., Mardinoglu, A. ... Cacciatore, I. (2024). Anticancer Potential of Novel Cinnamoyl Derivatives against U87MG and SHSY-5Y Cell Lines. Anti-Cancer Agents in Medicinal Chemistry, 24(1), 39-49.
[13]
Emanuelsson, E. B., Arif, M., Reitzner, S. M., Perez, S., Lindholm, M. E., Mardinoglu, A. ... Chapman, M. A. (2024). Remodeling of the human skeletal muscle proteome found after long-term endurance training but not after strength training. iScience, 27(1).
[14]
Thalén, N., Moradi, M., Lundqvist, M., Rodhe, J., Andersson, M., Bidkhori, G. ... Rockberg, J. (2024). Tuning of CHO secretional machinery improve activity of secreted therapeutic sulfatase 150-fold. Metabolic engineering, 81, 157-166.
[15]
Akbaba, Y., Kaci, F. N., Arslan, M. E., Goksu, S., Mardinoglu, A. & Turkez, H. (2024). Novel tetrahydronaphthalen-1-yl-phenethyl ureas : synthesis and dual antibacterial-anticancer activities. Journal of enzyme inhibition and medicinal chemistry (Print), 39(1).
[16]
Hudson, E. P. (2024). The Calvin Benson cycle in bacteria : New insights from systems biology. Seminars in Cell and Developmental Biology, 155, 71-83.
[17]
Gouleni, N., Di Rienzo, A., Yilmaz, A., Selvitopi, H., Arslan, M. E., Mardinoglu, A. ... Cacciatore, I. (2023). Novel styryl-thiazole hybrids as potential anti-Alzheimer's agents. RSC Medicinal Chemistry, 14(11), 2315-2326.
[18]
Kocak, G., Uyulgan, S., Polatli, E., Sari, V., Kahveci, B., Bursali, A. ... Guven, S. (2023). On-chip platform for derivation of ocular cells from hiPSCs. Tissue Engineering. Part A, 29(13-14).
[19]
Uhlén, M. & Lin, F. (2023). Antibody There? : Mapping the Human Proteome with Mathias Uhlén. GEN BIOTECHNOLOGY, 2(3), 167-171.
[20]
Liu, Z., Wang, W., Li, X., Zhao, J., Zhu, H., Que, S. ... Zheng, S. (2023). Multi-omics network analysis on samples from sequential biopsies reveals vital role of proliferation arrest for Macrosteatosis related graft failure in rats after liver transplantation. Genomics, 115(6).
[21]
Liao, X., Ozcan, M., Shi, M., Kim, W., Jin, H., Li, X. ... Zhang, C. (2023). Open MoA : revealing the mechanism of action (MoA) based on network topology and hierarchy. Bioinformatics, 39(11).
[22]
Kotol, D., Woessmann, J., Hober, A., Alvez, M. B., Tran Minh, K. H., Pontén, F. ... Edfors, F. (2023). Absolute Quantification of Pan-Cancer Plasma Proteomes Reveals Unique Signature in Multiple Myeloma. Cancers, 15(19).
[23]
Edwards, L. A., Woodhouse, C., Lee, S., Mullish, B. H., Portlock, T., Meoli, L. ... Shawcross, D. L. (2023). Faecal microbiota transplant restores gut barrier function and augments ammonia metabolism in patients with advanced cirrhosis : a randomised single-blind placebo-controlled trial. Journal of Hepatology, 78, S7-S7.
[24]
Möller, M., Jönsson, M., Lundqvist, M., Hedin, B., Larsson, L., Larsson, E. ... Hober, S. (2023). An easy-to-use high-throughput selection system for the discovery of recombinant protein binders from alternative scaffold libraries. Protein Engineering Design & Selection, 36.
[25]
Kataria, R., Shoaie, S., Grigoriadis, A. & Wan, J. C.M. (2023). Leveraging circulating microbial DNA for early cancer detection. Trends in Cancer, 9(11), 879-882.
[26]
Yulug, B., Ayyıldız, B., Ayyıldız, S., Sayman, D., Salar, A. B., Cankaya, S. ... Mardinoglu, A. (2023). Infection with COVID-19 is no longer a public emergency : But what about degenerative dementia?. Journal of Medical Virology, 95(9).
[27]
Sporre, E., Karlsen, J., Schriever, K., Asplund-Samuelsson, J., Janasch, M., Strandberg, L. ... Hudson, E. P. (2023). Metabolite interactions in the bacterial Calvin cycle and implications for flux regulation. Communications Biology, 6(1).
[28]
Oguzkan, S. B., Turkez, H., Ugras, H. I., Tatar, A. & Mardinoglu, A. (2023). Oxidative, Genotoxic and Cytotoxic Damage Potential of Novel Borenium and Borinium Compounds. Inorganics, 11(8).
[29]
Ovey, I. S., Ozsimsek, A., Velioglu, H. A., Altay, Ö., Mardinoglu, A. & Yulug, B. (2023). EGb 761 reduces Ca2+ influx and apoptosis after pentylenetetrazole treatment in a neuroblastoma cell line. Frontiers in Cellular Neuroscience, 17.
[30]
Kim, W., Li, M., Jin, H., Yang, H., Türkez, H., Uhlén, M. ... Mardinoglu, A. (2023). Characterization of an in vitro steatosis model simulating activated de novo lipogenesis in MAFLD patients. iScience, 26(10).
[31]
Laudette, M., Lindbom, M., Arif, M., Cinato, M., Ruiz, M., Doran, S. ... Borén, J. (2023). Cardiomyocyte-specific PCSK9 deficiency compromises mitochondrial bioenergetics and heart function. Cardiovascular Research, 119(7), 1537-1552.
[32]
Brown, A. A., Hong, M.-G., Dale, M., Uhlén, M., Schwenk, J. M., Viñuela, A. & et al., (2023). Genetic analysis of blood molecular phenotypes reveals common properties in the regulatory networks affecting complex traits. Nature Communications, 14(1).
[33]
Juarez, K., Reza, L., Breton-Deval, L., Morales-Guzman, D., Trejo-Hernandez, M. R., Garcia-Guevara, J. F. & Lara, P. (2023). Microaerobic degradation of crude oil and long chain alkanes by a new Rhodococcus strain from Gulf of Mexico. World Journal of Microbiology & Biotechnology, 39(10).
[34]
Kukil, K., Englund, E., Crang, N., Hudson, E. P. & Lindberg, P. (2023). Laboratory evolution of Synechocystis sp. PCC 6803 for phenylpropanoid production. Metabolic engineering, 79, 27-37.
[35]
Adori, M., Bhat, S., Gramignoli, R., Valladolid-Acebes, I., Bengtsson, T., Uhlén, M. & Adori, C. (2023). Hepatic Innervations and Nonalcoholic Fatty Liver Disease. Seminars in liver disease (Print), 43(2), 149-162.
[36]
Alvez, M. B., Edfors, F., von Feilitzen, K., Zwahlen, M., Mardinoglu, A., Edqvist, P. H. ... Uhlén, M. (2023). Next generation pan-cancer blood proteome profiling using proximity extension assay. Nature Communications, 14(1).
[37]
Yang, H., Li, X., Jin, H., Turkez, H., Ozturk, G., Doganay, H. L. ... Mardinoglu, A. (2023). Longitudinal metabolomics analysis reveals the acute effect of cysteine and NAC included in the combined metabolic activators. Free Radical Biology & Medicine, 204, 347-358.
[38]
Iglesias, M. J., Sanchez-Rivera, L., Ibrahim-Kosta, M., Naudin, C., Munsch, G., Goumidi, L. ... Odeberg, J. (2023). Elevated plasma complement factor H related 5 protein is associated with venous thromboembolism. Nature Communications, 14(1).
[39]
Carr, V. R., Pissis, S. P., Mullany, P., Shoaie, S., Gomez-Cabrero, D. & Moyes, D. L. (2023). Palidis : fast discovery of novel insertion sequences. Microbial Genomics, 9(3).
[40]
Dahl, L., Kotliar, I. B., Bendes, A., Dodig-Crnkovic, T., Fromm, S., Elofsson, A. ... Schwenk, J. M. (2023). Multiplexed selectivity screening of anti-GPCR antibodies. Science Advances, 9(18).
[41]
Battisti, U. M., Monjas, L., Akladios, F., Matic, J., Andresen, E., Nagel, C. H. ... Grotli, M. (2023). Exploration of Novel Urolithin C Derivatives as Non-Competitive Inhibitors of Liver Pyruvate Kinase. Pharmaceuticals, 16(5).
[42]
Arslan, M. E., Turkez, H., Sevim, Y., Selvitopi, H., Kadi, A., Oner, S. & Mardinoglu, A. (2023). Costunolide and Parthenolide Ameliorate MPP plus Induced Apoptosis in the Cellular Parkinson's Disease Model. Cells, 12(7).
[43]
Leitao, C. D., Mestre Borras, A., Jonsson, A., Malm, M., Kronqvist, N., Fleetwood, F. ... Lindberg, H. (2023). Display of a naïve affibody library on staphylococci for selection of binders by means of flow cytometry sorting. Biochemical and Biophysical Research Communications - BBRC, 655, 75-81.
[44]
Graves, O. K., Kim, W., Ozcan, M., Ashraf, S., Turkez, H., Yuan, M. ... Li, X. (2023). Discovery of drug targets and therapeutic agents based on drug repositioning to treat lung adenocarcinoma. Biomedicine and Pharmacotherapy, 161.
[45]
Rossi, R., Johansson, C., Heywood, W., Vinette, H., Jensen, G., Tegel, H. ... Ferlini, A. (2023). A Proof of Principle Proteomic Study Detects Dystrophin in Human Plasma : Implications in DMD Diagnosis and Clinical Monitoring. International Journal of Molecular Sciences, 24(6).
[46]
Turkez, H., Yildirim, O. C., Oner, S., Kadi, A., Mete, A., Arslan, M. E. ... Mardinoglu, A. (2023). Lipoic Acid Conjugated Boron Hybrids Enhance Wound Healing and Antimicrobial Processes. Pharmaceutics, 15(1), 149.
[47]
Battisti, U. M., Gao, C., Akladios, F., Kim, W., Yang, H., Bayram, C. ... Grotli, M. (2023). Ellagic Acid and Its Metabolites as Potent and Selective Allosteric Inhibitors of Liver Pyruvate Kinase. Nutrients, 15(3), 577.
[48]
Yulug, B., Altay, Ö., Li, X., Hanoglu, L., Cankaya, S., Lam, S. ... Mardinoglu, A. (2023). Combined metabolic activators improve cognitive functions in Alzheimer's disease patients : a randomised, double-blinded, placebo-controlled phase-II trial. Translational Neurodegeneration, 12(1).
[49]
Ezzamouri, B., Rosario, D., Bidkhori, G., Lee, S., Uhlén, M. & Shoaie, S. (2023). Metabolic modelling of the human gut microbiome in type 2 diabetes patients in response to metformin treatment. NPJ SYSTEMS BIOLOGY AND APPLICATIONS, 9(1).
[50]
Turkez, H., Altay, Ö., Yildirim, S., Li, X., Yang, H., Bayram, C. ... Mardinoglu, A. (2023). Combined metabolic activators improve metabolic functions in the animal models of neurodegenerative diseases. Life Sciences, 314, 121325.